| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2794 |
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| Symbol | pdxJ |
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| ID | 7385929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2327159 |
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| End bp | 2327911 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643651838 |
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| Product | pyridoxine 5'-phosphate synthase |
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| Protein accession | YP_002550023 |
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| Protein GI | 222149066 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0854] Pyridoxal phosphate biosynthesis protein |
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| TIGRFAM ID | [TIGR00559] pyridoxine 5'-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0224689 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCAGCAA AATTATCCGT CAATCTGAAT GCCATCGCCA TGCTGCGTAA CCGGCGCGAT
CTTCCCTGGC CGGATGTCCG GCATTTCGGT CGCCTGGCGC TTCAGGCGGG CGCTCAAGGC
CTGACTGTTC ATCCCCGGCC CGACCAGCGG CATGTCCGGT TCAGCGACCT GCCGCTGCTG
CGTGCGTTGA TCGATGACGA GTTTCCAAAG GCCGAGTTTA ATATCGAAGG TTATCCCAGC
GAAGATTTTC TACAGCTTTG CGAAGAGGCA CAGCCGGAGC AGGTGACGTT GGTCCCGGAT
GACCCGTCTC AGGCTACCTC TGATCATGGC TGGGATTTCG CCGCGCATCA AGTGTTTTTG
ACAGATGTCG TTGCGCGATT GAAGGCGGCA GGTATGCGGG TTTCCCTGTT TGCCGATGGC
GATGGGAATG CGCAGGCGGT TGCCACGGCC AAGGCGACCG GCGCCGACCG GATCGAGCTT
TACACGGGAC CATATGGCAG CTGCTACGAC GCGCCGGAAA AAGCGGCCCG TGAACTAGCG
CTTCTGGGGG CAACCGCTGA TGCGGCGCAT GCTCTGGGCA TGGGCGTCAA TGGCGGTCAT
GACCTGACAA TCGCCAATCT TCCGGCGCTG GCGGAGCGGA TTCCCTTCCT GGCCGAGGTC
TCTATCGGTC ACGCGCTGAC GGCGGACGCG CTGGAATTCG GCATGGCCGA AACCGTTCGG
CGTTTTCGCC GAGCCTGTGG CGAGTTGGCC TGA
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| Protein sequence | MPAKLSVNLN AIAMLRNRRD LPWPDVRHFG RLALQAGAQG LTVHPRPDQR HVRFSDLPLL
RALIDDEFPK AEFNIEGYPS EDFLQLCEEA QPEQVTLVPD DPSQATSDHG WDFAAHQVFL
TDVVARLKAA GMRVSLFADG DGNAQAVATA KATGADRIEL YTGPYGSCYD APEKAARELA
LLGATADAAH ALGMGVNGGH DLTIANLPAL AERIPFLAEV SIGHALTADA LEFGMAETVR
RFRRACGELA
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