Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2658 |
Symbol | secD |
ID | 7386651 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 2198037 |
End bp | 2200607 |
Gene Length | 2571 bp |
Protein Length | 856 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643651731 |
Product | bifunctional preprotein translocase subunit SecD/SecF |
Protein accession | YP_002549918 |
Protein GI | 222148961 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0341] Preprotein translocase subunit SecF [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR00966] protein-export membrane protein SecF [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGCATT TCTCCCGCTG GAAAACCATT CTCCTCTGGC TTGCCGTCGT GGCGAGCGTC CTGATCGCGC TGCCCGACCT GTTCAGCAAG GATCAACTGG CCCGTCTTCC GTCCTGGTTC CCGAGCAAGC AGATGACGCT CGGCCTCGAT TTGCAGGGCG GCTCGCATAT CATGCTGAAG ATCGAGCGCA ACGATATCGT CAAGGAGCGG CTTGAAGCCG TGGTTGGCGA TATCCGCAGC AGTCTTCGCG ATGCGGGCGT TCGCTATACC GGGCTGAATG GCGTTGGCCA GGCGGTCCAG GTCCGCATTA CCGATCCGGC TCAGCTTGAT GCGGCGCGCA AGGCCTTGCA GACACTAACC GCGCCTGTCA GCACCGGCGG TTTCGGGTCG AGCAGCGTCC AGGAAGCGAC ACTGGACGAT AGCGGCGATG GGGTGTTGAA GTTTAACCTC ACCGATGCCG GTATCGATTA CCGCATGTCC TCGGCGCTCA CCCAGTCCAT CGAAGTCGTG CGCCGCCGCG TCGATGAGCT TGGCAATACC GAGCCGTTGA TCCAGCGTCA GGGCTCCGAC CGCATCATCG TGCAGGTGCC GGGTCTGGAT GATCCGCAGC GTTTGAAGAA TCTTCTGAAC CAGACCGCGA AACTAAGCTT CCGCATGGTC GATACCAGCA TGTCGGCAAC CGAAGCGATC AGCGGCCGCC CGCCTGCCAC GTCCGAAGTG CTCTACAGCC AGGATGAGGC CGCGGTGCCT TATCTGGTCG AAAAGCGGGT TCTGGTGTCC GGTGAGGATC TCGTCGATGC GCAGGCAAGC TTCAATCAGC AAAATAACGA ACCGGTCGTC AGCTTCCGCT TCGATAGCCG TGGTGCGCAG CGGTTTGCCC AGGCGACCCA ACAGAATGTC GGGCGGCCCT TTGCCATCGT GCTCGACAAT CAGGTGATTT CCGCGCCTGT GATCCGTGAA CCGATTGTCG GTGGCTCCGG CCAGATTTCT GGTAATTTCA CGGTGCAGGG CGCCAATGAC CTGGCCGTCC TGCTGCGCGC TGGCGCACTG CCGGCAACCT TGACCGTGGT CGAAGAGCGC ACCGTCGGCC CAAGCCTTGG CGCCGATTCG ATCCGCGCAG GTGTTTCGGC TGGATTCATC GGGGCCGCGC TTGTCGTCGT GCTGATGATC GGGCTTTACG GCTTCTTCGG TGTGCTGGCC GTTCTGGCGC TGTTTGCCAA TATCGTCATG ATTATTGCCA TCCTGACGCT GCTTGGATCG ACGCTGACGC TGCCGGGCAT CGCCGGTATT GTGTTGACCA TCGGTATGGC GGTTGATTCC AACGTGCTGA TCTACGAGCG TATCCGAGAG GAATACAAGA GCGGGCGTTC CCTGATCCAG TCGATCGATA TCGGCTTCAA CAAGGCCTTG GCGACGATTG TCGATGCCAA TGTTACGACG CTGATTGCTG CTGGCGTGCT GTTCTTCCTT GGCTCCGGTC CTGTACGCGG CTTTTCGGTG ACGCTGGCCA TCGGTATCAT CACCACCGTA TTTACCGCCT TTGGCTTGAC CCGCTGGATG TTTACCGTCT GGGTCAACAC GCGCCGTCCC AAGGCTCTTC CCAAGGGGGT TCGGACCGGA ATTTTCGACG GAACCAACAT CCCGTTCATG GGTGTCCGCC GTTACACGTT CCTGCTGTCG GCGGCCTTGT CTATAGCCGC TCTCGTTGGT TTCGGCACAG TTGGTATGAA ACTCGGCATC GATTTTACCG GCGGTTCGAT CATCGAATTG AAGGCGCGTC AGGGCAATGC TGATCCCGCC GCCATTCGCG AACAATTGAG CAGTCTCAAC CTCGGCGATG TCCAGGTTCA GGGTTTTGGC GATCCGAGCA GTGTGCTGGT CCGTTTGCAG GCCCAGGACG AGGGTGAAAA CGGCGAACAA TCGGCTGTTG CCAAGGTGCG GGGCGCATTG GAACAGGCCT ATGAGTTCCG CCGCACCGAA GTGGTCGGGC CGTCCGTGTC TGGTGAGCTG ACGAAATCGG CAACCATCGG CGTGCTGATT TCGCTGATGG CGATCCTGGT CTATATCTGG ATCCGGTTTG AGTGGCAGTT TGCGGCAGGC GCGATCATCG CAACCCTGCA TGACGTCATC CTGACGCTTG GCCTCTACGT GGTCACCGGG GTGGAATTCG ACCTCAGTAG TATCGCGGCT ATCCTGACGA TTGTCGGCTA TTCGCTGAAC GATACCGTGG TCGTCTATGA CCGCATGCGC GAGAACCTGC GCCGTTACAA GAAAATGCCG CTGGATGTGT TGATCGACAC GTCGATCAAC CAGACCCTGT CGCGGACCAT CCTGACATCG GTGACGACGC TTCTGGCTCT TCTGGCCCTG TTCCTGTTCG GTGGCGAAGT TATCCGCTCC TTCACCTTTG CCATGCTGTT CGGGGTTCTT GTCGGCACAT TTTCCTCTAT CTATATGGCG GCGCCGGTGC TGATCGCCTT CCGTCTGCGC CCTGAGGGCC AGGGCGAGCC GGATAAGGCT GGAAAAGCAA AGCCGGAAAA GAATGGCGCG ACGGGCAAGG CGGGAGCATA G
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Protein sequence | MLHFSRWKTI LLWLAVVASV LIALPDLFSK DQLARLPSWF PSKQMTLGLD LQGGSHIMLK IERNDIVKER LEAVVGDIRS SLRDAGVRYT GLNGVGQAVQ VRITDPAQLD AARKALQTLT APVSTGGFGS SSVQEATLDD SGDGVLKFNL TDAGIDYRMS SALTQSIEVV RRRVDELGNT EPLIQRQGSD RIIVQVPGLD DPQRLKNLLN QTAKLSFRMV DTSMSATEAI SGRPPATSEV LYSQDEAAVP YLVEKRVLVS GEDLVDAQAS FNQQNNEPVV SFRFDSRGAQ RFAQATQQNV GRPFAIVLDN QVISAPVIRE PIVGGSGQIS GNFTVQGAND LAVLLRAGAL PATLTVVEER TVGPSLGADS IRAGVSAGFI GAALVVVLMI GLYGFFGVLA VLALFANIVM IIAILTLLGS TLTLPGIAGI VLTIGMAVDS NVLIYERIRE EYKSGRSLIQ SIDIGFNKAL ATIVDANVTT LIAAGVLFFL GSGPVRGFSV TLAIGIITTV FTAFGLTRWM FTVWVNTRRP KALPKGVRTG IFDGTNIPFM GVRRYTFLLS AALSIAALVG FGTVGMKLGI DFTGGSIIEL KARQGNADPA AIREQLSSLN LGDVQVQGFG DPSSVLVRLQ AQDEGENGEQ SAVAKVRGAL EQAYEFRRTE VVGPSVSGEL TKSATIGVLI SLMAILVYIW IRFEWQFAAG AIIATLHDVI LTLGLYVVTG VEFDLSSIAA ILTIVGYSLN DTVVVYDRMR ENLRRYKKMP LDVLIDTSIN QTLSRTILTS VTTLLALLAL FLFGGEVIRS FTFAMLFGVL VGTFSSIYMA APVLIAFRLR PEGQGEPDKA GKAKPEKNGA TGKAGA
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