Gene Avi_2286 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2286 
SymbolcspA 
ID7386372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp1877410 
End bp1877988 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content57% 
IMG OID643651452 
Productcold shock protein 
Protein accessionYP_002549643 
Protein GI222148686 
COG category[K] Transcription 
COG ID[COG1278] Cold shock proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00549771 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGGATA GAATTTCAGC GAAAGAGTTC GTGGAATTCA GCGGGCTCTC GGAAGAGCCC 
CTGGATCTTG TCGAGATCAC CGGTGTGGTG AAATGGTTCG ACGTTGCCAA GGGTTTTGGC 
TTTATCGTAC CGGATAATGG CATGCAGGAC GTCTTGCTGC ATGTAACCTG CCTGCGCCGG 
GACGGTTACC AGACCATCCT GGAAGGAACC CGGATCGTCG CGCTGATCCA TAAGCGCGAT 
CGGGGCTATC AGGCCTTCCG TGTTCTGTCG ATGGACCAAT CGACGGCAAC GCATCCGTCA 
CAAATGCCGC CTGTGCGGAC CCACGTTCAG GTGACGCCAT CGAGTGGGTT GGAGCGTGTT 
CTGGTCAAAT GGTTCAATCG CACCAAAGGC TTCGGCTTCC TGACGCGGGG CGAGGGCACC 
GAGGACATTT TCGTTCACAT GGAAACGCTG CGTCGATTCG GCTTGACAGA ATTGCGGCCC 
GGACAGACAG TGCTGGTACG CTTCGGCAAT GGCGACAAAG GCCTGATGGC GGCAGAAATT 
CACCCGGATA ACCCTGCGCC GCATGTTATG GCGCATTGA
 
Protein sequence
MADRISAKEF VEFSGLSEEP LDLVEITGVV KWFDVAKGFG FIVPDNGMQD VLLHVTCLRR 
DGYQTILEGT RIVALIHKRD RGYQAFRVLS MDQSTATHPS QMPPVRTHVQ VTPSSGLERV 
LVKWFNRTKG FGFLTRGEGT EDIFVHMETL RRFGLTELRP GQTVLVRFGN GDKGLMAAEI 
HPDNPAPHVM AH