| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2181 |
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| Symbol | |
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| ID | 7387893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1794068 |
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| End bp | 1795297 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643651374 |
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| Product | ABC transporter substrate binding protein |
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| Protein accession | YP_002549568 |
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| Protein GI | 222148611 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4134] ABC-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.459496 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGATGA AATTCCTGGC CATCGCGGCC CTGACGCTCG CCGCTTCTGT CGCTCCGTGT
TTGAGCGCCG AAACCAATAT GAAAAATCTT GATTTCGATC TCTCCAAGGT CACAAGGGAG
AATTTCTACG ACATCGTCGT TCCCGCCGCC AAAGCCGAGG GAACGGTGAC TATGTATAAT
TACGCCGGTA GCTTCGCTGA CACCTGGAAA AACCTGACCG ACAGTTTCAC CGCCAAGTAC
GGCATCAAGG TCGTCTATAG CGACGTCAAC GGCGATCAGG CCAACCAGCA GCTGATCGCG
GTCCAGGCCT CGGGCCAGGA TTCTCCCGTA GATGCTTATT TCGCTGGCGG CGGCAGCTAT
CCGCTACTCT CGGCCAAAGG TGTCATCGGT AAGATTCCAC TGACGAAAAT TCTTCCGAAC
ATGGCAACCT ATGATCCGGT CCTGGCGCAG ACATTGTTCG GACGCCAGCA TGGCGGCACT
TTTCCGCTCG TGCATCTCAA CCAGACGGCA ATCGGCTATG ACAGCGCCTT CGTCAAACCG
AATGAGGTTC CCAAGAGTTT TGACGAACTG TTGGCCTGGG CAGAAAGCCA TCCCAAGCGC
CTGGGCGTCA CTTTGCCAGC CAAGGGCGGA TCGGGTGGAG GTTTCATCTA TTCCGTGGCG
CTCAATTATC TGACTGGCGA TTGCCGCACA GCCCTGACCG ACTACAGCAA AACGCTTCAA
CAAGCCGAAG ACTGGGCAAT GACCTCCGAA TGCCTGACGC CTGTCTGGGA CTATTACCGC
CGCCTGCTGA AGGCTGCGGA ACTGACCAAT GGCAATGCCG ATACGCTGAA CCTGATCAAC
AACCAGCAGC TCTATATGGG GACGGTCTGG GAAGATCAGG TGATGAGCTT TCTCGGCAAC
AAGCAATTGC CCGAAACCTT CCGCCTGACG CTGCTGGAAA AGGGACAGGT CGGCTCCGGT
GACGCTATGT TCGTCCCGGC CAATGCCAAG CATGTCGCCG CCGCCCTGCT GCTGATCGAT
ATGGCCATGA GCAAGGAGTT TCAGACCTTC AAGCTGGAAA CCAAGGCTTC CCGCTCCCCG
CGCACCGATA TCACCAACGA TCTGATCCCG ACTGCCCTCC AGGATCACGT TCTGCCGAAA
AGTGTCTATC CCCGCCTGTC GGTGTCAGCT TTCTGGGACA TGTCAACCGC CCTTGCCGAA
GCGCTCGATG AGAAAGTCCT GAACCAGTAA
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| Protein sequence | MQMKFLAIAA LTLAASVAPC LSAETNMKNL DFDLSKVTRE NFYDIVVPAA KAEGTVTMYN
YAGSFADTWK NLTDSFTAKY GIKVVYSDVN GDQANQQLIA VQASGQDSPV DAYFAGGGSY
PLLSAKGVIG KIPLTKILPN MATYDPVLAQ TLFGRQHGGT FPLVHLNQTA IGYDSAFVKP
NEVPKSFDEL LAWAESHPKR LGVTLPAKGG SGGGFIYSVA LNYLTGDCRT ALTDYSKTLQ
QAEDWAMTSE CLTPVWDYYR RLLKAAELTN GNADTLNLIN NQQLYMGTVW EDQVMSFLGN
KQLPETFRLT LLEKGQVGSG DAMFVPANAK HVAAALLLID MAMSKEFQTF KLETKASRSP
RTDITNDLIP TALQDHVLPK SVYPRLSVSA FWDMSTALAE ALDEKVLNQ
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