Gene Avi_1927 details

Gene Information

• Locus tag: Avi_1927
• Symbol: rpsD
• ID: 7387230
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1597402
• End bp: 1598019
• Gene Length: 618 bp
• Protein Length: 205 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643651192
• Product: 30S ribosomal protein S4
• Protein accession: YP_002549389
• Protein GI: 222148432
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAAGC GCGCATCTTC CAAGTACAAA ATTGACCGCC GTATGGGCGA AAATATCTGG 
GGCCGCCCGA AGTCCCCGGT TAACCGTCGC GAATACGGCC CCGGCCAGCA CGGTCAGCGC 
CGCAAGGGCA AGCTTTCCGA CTTCGGTGTG CAGCTGCGCG CCAAGCAGAA GCTGAAGGGC 
TACTACGGCG ACCTGCGTGA AAAGCAGTTC CGCGCCACCT ACGACGAAGC CAACCGTCGC 
AAGGGCGATA CCTCCGAAAA CCTGATCGGC CTGCTGGAAT CGCGTCTGGA CGCCATCGTC 
TACCGCGCCA AGTTCGTGCC GACTGTGTTT GCTGCCCGTC AGTTCGTCAA CCACGGCCAC 
GTTTCGGTCA ATGGCGTCAA GGTCAACATC GGTTCATACC GCTGCAAGGC TGGCGACGTT 
ATTGAAGTGC GTCAGAAGTC CAAGCAGCTG GCCATCGTTC TGGAAGCTAC GCAGCTTGCC 
GAACGTGACG TTCCCGATTA CATCGAAGTT GATCACAACA AGATGGTTGC GACCTTCGTT 
CGTGTACCAA CTCTGTCGGA CGTTCCTTAC GCTGTTATCA TGGAACCGCA GCTGGTCGTC 
GAATTCTACT CGCGTTGA 

 

Protein sequence

MSKRASSKYK IDRRMGENIW GRPKSPVNRR EYGPGQHGQR RKGKLSDFGV QLRAKQKLKG 
YYGDLREKQF RATYDEANRR KGDTSENLIG LLESRLDAIV YRAKFVPTVF AARQFVNHGH 
VSVNGVKVNI GSYRCKAGDV IEVRQKSKQL AIVLEATQLA ERDVPDYIEV DHNKMVATFV 
RVPTLSDVPY AVIMEPQLVV EFYSR