| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1845 |
|---|
| Symbol | rplV |
|---|
| ID | 7386807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1535560 |
|---|
| End bp | 1535949 |
|---|
| Gene Length | 390 bp |
|---|
| Protein Length | 129 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643651131 |
|---|
| Product | 50S ribosomal protein L22 |
|---|
| Protein accession | YP_002549328 |
|---|
| Protein GI | 222148371 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0091] Ribosomal protein L22 |
|---|
| TIGRFAM ID | [TIGR01044] ribosomal protein L22, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000645692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAGG CAAAAGCCGA ACGCCGGCTG AAGGATAACG AGGCGCAGGC CGTTGCGCGC
ACGCTCCGCG TCAGCCCTCA GAAGCTCAAC CTGGTTGCAG CTTTGATCCG TGGCAAGAAG
GTCGACCGCG CTCTGGCCGA CCTGACATTC TCGCGCAAGC GCATTGCAGA TACAGTGAAG
AAGACACTGG AATCAGCTAT TGCAAACGCT GAGAACAATC ACGACCTCGA CGTCGATCAG
TTGATCGTCG CCGAAGCCTA TGTTGGTAAA TCGATCACCA TGAAGCGTTT CCACGCTCGT
GGCCGTGGCC GCGCATCGCG CATTGAAAAG CCATTCTCGC ATCTGACGAT TGTCGTGCGC
GAAGTCGAAG CCAAAGGGGA GGCCGCATAA
|
|---|
| Protein sequence | MGKAKAERRL KDNEAQAVAR TLRVSPQKLN LVAALIRGKK VDRALADLTF SRKRIADTVK
KTLESAIANA ENNHDLDVDQ LIVAEAYVGK SITMKRFHAR GRGRASRIEK PFSHLTIVVR
EVEAKGEAA
|
|---|
| |