Gene Avi_1612 details

Gene Information

• Locus tag: Avi_1612
• Symbol: nrdR
• ID: 7387407
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1351830
• End bp: 1352306
• Gene Length: 477 bp
• Protein Length: 158 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643650956
• Product: transcriptional regulator NrdR
• Protein accession: YP_002549161
• Protein GI: 222148204
• COG category: [K] Transcription
• COG ID: [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
• TIGRFAM ID: [TIGR00244] transcriptional regulator NrdR

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTTGCC CGTTTTGCGG TTCGGACGAT ACCCAGGTCA AGGATTCACG CCCGGCGGAG 
GACAATAGCG CCATCCGCCG GCGTCGGATC TGCCCGGATT GCGGCGGACG CTTCACCACG 
TTCGAGCGCG TGCAACTGCG CGAGCTGACC GTGTTGAAAA AGACAGGCCG CAAGGCACCT 
TTTGATCGTA ACAAGCTGGT GCGGTCTTTC GAGATCGCCC TTCGCAAACG TCCCGTCGAC 
CGGGACCGGA TTGAGCGGGC GGTCTCCGGC ATCGTGCGGC GGCTGGAAAG CTCCGGCGAG 
ACGGAAATTT CCTCCGAACA GATCGGCTTG CAGGTGCTGG AAGCGCTGAA AAGCCTCGAT 
GACGTGGCTT TCGTGCGTTA CGCCTCGGTC TATCGCGATT TTTCCCATGC CGAGGATTTC 
GAGCAGGTCA TTTCTGAAAT TACCGCCAAG ATTTCCCAGG ATCACGAACC GGGGTAA 

 

Protein sequence

MRCPFCGSDD TQVKDSRPAE DNSAIRRRRI CPDCGGRFTT FERVQLRELT VLKKTGRKAP 
FDRNKLVRSF EIALRKRPVD RDRIERAVSG IVRRLESSGE TEISSEQIGL QVLEALKSLD 
DVAFVRYASV YRDFSHAEDF EQVISEITAK ISQDHEPG