| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1338 |
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| Symbol | |
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| ID | 7389083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1122759 |
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| End bp | 1124021 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643650754 |
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| Product | phage major capsid protein HK97 family |
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| Protein accession | YP_002548960 |
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| Protein GI | 222148003 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
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| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0373474 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGATC ATCAGATGAC TGCCCCCGAA ATCAAGGCGA TCCCGGAAAC CATGGCCGCC
GCCTTCGACG ACTTTATGGA AGCCTTCGAA GGCTTCAAGC AGGCCAATGA CCAGCGGCTC
GGCGAAATCG AGCAGAAACT GACCGCCGAT GTCGTCACCC GCGACAAGGT GGAGCGGATC
AACAAGGCGA TGGACGAACA GTCCCGGCTG CTGGACCAGC TGGCGCTGAA AAAGCTGCGC
CCGGCGCTGG GATCGAACGG CAATCGTGGC GGTTCCGGCA GCCTGGAGGC GACAGAGCGC
AAGGCGGCCT TCGAGGCCTA TATCCGGCGC GGCGATGAAA CGGCGCTGCG CGATCTCGAT
GCCAAATCCA TGGCGATTGG TTCGGATGCG GATGGCGGAT ATCTGGTGAC GGATGAGACC
GATAGTGAGA TTGGCCGCAG GCTCGCCTCC ATCTCGCCGA TCCGGCAATT GGCCAGCGTC
CGGCAGGTGT CGGGCGCGGT GCTGAAAAAG CCGTTTGCCC CAAGCGGCAT GGCCTCCGGC
TGGGTGGCGG AAACCGCGGC CCGCACCCAG ACCGATACGC CGCAGCTGAC GGAACTTTCC
TTTCCGACCA TGGAGATTTA CGCCATGCCC GCCGCCACCC AGTCGCTGCT GGATGATGCT
GCTGTTGATG TCGAAGCCTG GATTGCCGGA GAGGTGGATA TTGCCTTTGC CGAGCAGGAA
GGGGCAGCCT TTGTGGCGGG CGATGGTGTT AACAAGCCGA AGGGCTTCCT CGCCTATGAG
ACGGTGGCCG ACACCGCCTG GGCCTGGGGC AAGATCGGCT TCAAGGCGAC CGGCGCTGCC
GGTGGCTTTG CCGCAAGCGG GCCATCCGAC GTATTGCTCG ACACCATCTA CGCGCTGAAG
GCCGGGCATC GCCAGAACGG CACGTTTGTG ATGAACCGCA AGACCCAGGG CGAAATCCGC
AAGTTCAAGG ATGCCGACGG CAATTATCTC TGGCTGCCGC CCGCAGGCCC TGGCCTTGAA
GCCTCGTTGA TGGGCTTTCC GATTGCCGAG GCTGAGGACA TGCCCGATAT CGCCGCCAAC
GCCTTTTCCA TCGCCTTTGG CGATTTCAAG GCCGGGTATC TGGTGGTTGA CCGCATGGGT
GTGCGGGTGC TGCGCGATCC CTATTCGGCC AAGCCCTATG TGCTGTTCTA CACCACCAAA
CGGGTTGGTG GTGGAATGCA GAACTTTGAA GCGCTCAAGC TGATCAAGTT TGCTGCCAGT
TAA
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| Protein sequence | MSDHQMTAPE IKAIPETMAA AFDDFMEAFE GFKQANDQRL GEIEQKLTAD VVTRDKVERI
NKAMDEQSRL LDQLALKKLR PALGSNGNRG GSGSLEATER KAAFEAYIRR GDETALRDLD
AKSMAIGSDA DGGYLVTDET DSEIGRRLAS ISPIRQLASV RQVSGAVLKK PFAPSGMASG
WVAETAARTQ TDTPQLTELS FPTMEIYAMP AATQSLLDDA AVDVEAWIAG EVDIAFAEQE
GAAFVAGDGV NKPKGFLAYE TVADTAWAWG KIGFKATGAA GGFAASGPSD VLLDTIYALK
AGHRQNGTFV MNRKTQGEIR KFKDADGNYL WLPPAGPGLE ASLMGFPIAE AEDMPDIAAN
AFSIAFGDFK AGYLVVDRMG VRVLRDPYSA KPYVLFYTTK RVGGGMQNFE ALKLIKFAAS
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