| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1330 |
|---|
| Symbol | |
|---|
| ID | 7389078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1117734 |
|---|
| End bp | 1119113 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643650749 |
|---|
| Product | large terminase |
|---|
| Protein accession | YP_002548955 |
|---|
| Protein GI | 222147998 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5323] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01630] phage uncharacterized protein (putative large terminase), C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.334164 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACACC TGCGCGACAC GGTTTCGGCG CTGGGCGATG AGGGATCGCT GCTGGCGCAG
ACGATCATCG CGCGGCAGGG CCATAATTCT CCGGTTCTGG CTGGTCAGGC GGATGGAAAT
AACGGCGTTG ATATGATGCA GGGGCTGGAG CTTGCGGCCT TGCAACGGCT GGCGCGCAGC
TGGGCCTTGC TGCGACACCC GTTGCAAGCG CCGCCCGAGG GGGCGTGGCG CAATTGGTTG
TTGATGGGCG GCCGCGGTTC CGGCAAGACC CGGGCCGGGG CCGAATGGGT GCATGAGATC
GCCTCGGCTG GTGAAAAATC CGCTGTGCGG ATTGCACTGG TGGGCGAAAC CCTGGGCGAT
GCCCGCGAGG TGATGGTGGA TGGTCTGTCG GGCATCGCCC GTATAGCCCG CCACAAACGC
CCGGAAGTGG AAATTTCCCG GCGCAGGCTG GTCTGGCCGA ATGGCGCGAT GGCGCAGATG
TTTTCCGCTG AAGACCCGGA GAGCCTGCGC GGCCCGCAGT TTCACTATGC CTGGTGCGAT
GAGATTGCCA AGTGGAAGCA TGCCGAGGAA ACCTTCGATA TGCTGCAATT TTCCCTGCGG
TTGGGGGATG ATCCCCGCCA GGTGATTACC ACCACGCCGC GTCCGGTGCC GATCCTGAAA
CGGTTGCTGG CGGACCCCGG CACGCGGCTG ACCCGGCTTT CCACCTTCGG GAATGCTTGC
AATCTCGCGC CCGGCTTTAT CGAGGCCTTG CAGGCCCGTT ACGGTGGCAC GCGGCTTGGC
CGTCAGGAAT TGGATGGTGA ACTGATAGAG GACCGGGAGG ATGCGCTGTG GCGGCGCGAC
CGGCTGGAGC AGTTGACGGT CAGGCTCAGT GAGCCGCTGC ACCGCATTGT CGTCGGCGTC
GATCCACCCT CCGGGGCGGG TGCGCAATCG GTCTGCGGCA TAATTGTTGC CGGTCTCGAC
CGGCTGGGCC GGGCAGTGGT GCTGGCTGAT TGTTCGGTGA CGGGGGAAAG CCCGGCCAGT
TGGGCGACCG CCGTGGTGCG GGCGTTTCGC CGGTTTGAAG CGGACCGGGT GGTGGCGGAG
GTCAATCAGG GCGGGGAAAT GGTTGGCGCG CTGCTGAAAA GCGTCGATGC CAACCTGCCG
GTGCGCATGG TGCGGGCGAC GCGTGGCAAG TTTTTGCGGG CCGAGCCTGT GGCGGCTCTC
TATGAACAGG GCCGCGTTTT TCACGCAGCC CGTTTTGCCG ATCTGGAAGA TCAAATGTGT
GATTTCGGCC CTGAGGGCCT GTCGAATGGC CAGTCGCCGG ATAGGCTTGA TGCGCTGGTC
TGGGCTTTGA CCGCGCTGCT TCTGGAATGC GCGGGCGAGC CGCGCATTCG CACGCTATAA
|
|---|
| Protein sequence | MQHLRDTVSA LGDEGSLLAQ TIIARQGHNS PVLAGQADGN NGVDMMQGLE LAALQRLARS
WALLRHPLQA PPEGAWRNWL LMGGRGSGKT RAGAEWVHEI ASAGEKSAVR IALVGETLGD
AREVMVDGLS GIARIARHKR PEVEISRRRL VWPNGAMAQM FSAEDPESLR GPQFHYAWCD
EIAKWKHAEE TFDMLQFSLR LGDDPRQVIT TTPRPVPILK RLLADPGTRL TRLSTFGNAC
NLAPGFIEAL QARYGGTRLG RQELDGELIE DREDALWRRD RLEQLTVRLS EPLHRIVVGV
DPPSGAGAQS VCGIIVAGLD RLGRAVVLAD CSVTGESPAS WATAVVRAFR RFEADRVVAE
VNQGGEMVGA LLKSVDANLP VRMVRATRGK FLRAEPVAAL YEQGRVFHAA RFADLEDQMC
DFGPEGLSNG QSPDRLDALV WALTALLLEC AGEPRIRTL
|
|---|
| |