| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0910 |
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| Symbol | rluB |
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| ID | 7387710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 768162 |
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| End bp | 770276 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643650438 |
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| Product | ribosomal large subunit pseudouridine synthase B |
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| Protein accession | YP_002548646 |
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| Protein GI | 222147689 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.237604 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGATA AAGAAAAGTT CAAGCGGCCG GGCAGCAAGC CCGCTGGCCG CCCCTTCAAG
ACATCTGCCG AAAAACCCGG CAAATCCGGC CCAAAAAGCT TTGGTGCCCA GAAAAAATTT
GGCGAAAAGG CCGATGCGGC ACCGCGTGAC AAATCGGATG CGGCACCGCG CCCTAGACCT
GATGCGGCAC CGCGAAAGAG CGCAACACCT GCTGCCAAGA CCGGCAGCGA GGACACGCTG
AAGCCCGAGC GGATTTCCAA GCTGCTGGCG CGTGCCGGTA TCGCTTCGCG CCGCGACGTG
GAACGCATGA TCATGGAAGG CCGCGTGGCC GTCAATGGCA AGGTGCTGGA CAGCCCGGTG
CTGAACGCCA CGCTGGCCGA CCGGATCGAA GTGGATGGCG AGCCCATTCG CGGCATCGAG
CGCACACGGC TCTGGCTCTA TCATAAGCCG TCCGGCCTGG TGACGACCAA TTCGGACCCG
GAAGGACGCC CGACCGTATT CGACAACCTG CCGGAGGAAT TGCCGCGGGT GATGTCGATC
GGACGGCTCG ATATCAATAC CGAAGGCCTG CTGCTGCTGA CCAATGATGG CGGCTTGGCG
CGGGTGCTGG AACTGCCGAC CACCGGCTGG CTGCGCCGCT ACCGCGTACG CGCCTATGGC
GAGATCGATC AGGCCAAGCT TGACACGCTG AAGGACGGCA TCGCGGTCGA CGGCGTGCTC
TACGGTGCCA TCGACGCGGT TCTGGACCGC AGCCAGGGCC ATAACGTCTG GATCACAATG
GGCTTGCGCG AAGGCAAGAA CCGGGAAATC AAGAATGTGC TCGGCGCGCT TGGCCTTGAG
GTCAACCGGC TGATTCGCAT TTCCTACGGT CCTTTCCAAC TGGGCGACCT GCCGGAATCC
CAGGTGCAAG AAGTGCGTGG CCGCATGTTG CGCGACCAGC TCGGTCCGCG CCTGATCGAG
GAATCCAAGG CCAATTTCGA CGCGCCGCTC TATTCCAACG CCCCCGCCGA GGAAGAGGAT
GCGCCTGCGC CAAAAGCCAA GGCGAAAGCC GAGGAAGGCA ATTGGAAGAA GGACACACGG
CCAGCCAAGC CGCGCGGCTT CGACAACCGT GAGGACGCCC GCGAAAAGGC ACTCAGCCGG
CTCGACACCC GCCGCGACGG TGCAAAGCCT GCCTTCGGCA GCAAGCCTGG ATTTGGCGGC
AAGCCCGGCT TCAAGGGGAA ACCTGCGGCT GGCCGTGACG GTGACGATGC AGCCCGCGAT
GGCAAGCCAA AGCGCATGCC ACTTGGCCAG AGCCGCACCG CCAATGTCTG GATGGCACCG
GGCGCACGTC CAGTGTCTGA AAAGAAGACG GCAAGTGATG AGGCCCGCAA AAGCGGACCT
CGCGCCCGCC CCGATGGCGC ACCGCAGACC AAGCGTTATG GCCGCACCAA GGACGGCGCG
CCGACCAAGA GCCTTTCACG TCACGACCCG GATCGTGGAC AGTATGCCGG CAGTGACGAT
AAAGATTTGC GCGTCAAGGT CAGCCGCGCT CGTGATGCCG AGGGCGAATG GATTCGCGCC
GAAGGCCCCG ACAGCAAACC GACGGCACGT GGCGGACGCT CTGGCGAAGG CTTTGGCGGC
AAGCGGGATG GCGCAGATCG TGGTGCCCGT CCCGCATATG GTGACAAACC TGCCTATGGT
GATCGGCCAG CGCGTGGCGA GCGTGCAGCG CCCAGTGACC GGCCTTCGCG CGGCCAATGG
CCCGCACGTG GAGATCGCCC GGACCGGGGC GAAAGACCTG CTCGCAGCGA TGCTCCGGCC
CGCAGTGATC GCCCCTATTC CGGTCGCCCC ACCGGAGAAA GAGCCGAGCG GCCAACCGGC
GACCGGCCTT ATGACGGACG GCCAAAATCC CGTTCCGCTT CCGGCGACAA GCCGTCCTTT
GGTGGGAAGC CATCCTTTGG CGGAAAACCG GCGGGCAAAT CCTCGTTTGG TGGCAAACCG
TCTTCCGGTG GAAAGCCTGG CTTTGGTGGC AAGCCGGGCG GGAAGCCCGG TTCTGCCAGA
CCCGGCTCTA CCAGATCAGA TGCAGGGCGT GGCCCATCGC GTGGCCCTTC CTCTGGCCCC
AAAGGCAAGA GGTAA
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| Protein sequence | MTDKEKFKRP GSKPAGRPFK TSAEKPGKSG PKSFGAQKKF GEKADAAPRD KSDAAPRPRP
DAAPRKSATP AAKTGSEDTL KPERISKLLA RAGIASRRDV ERMIMEGRVA VNGKVLDSPV
LNATLADRIE VDGEPIRGIE RTRLWLYHKP SGLVTTNSDP EGRPTVFDNL PEELPRVMSI
GRLDINTEGL LLLTNDGGLA RVLELPTTGW LRRYRVRAYG EIDQAKLDTL KDGIAVDGVL
YGAIDAVLDR SQGHNVWITM GLREGKNREI KNVLGALGLE VNRLIRISYG PFQLGDLPES
QVQEVRGRML RDQLGPRLIE ESKANFDAPL YSNAPAEEED APAPKAKAKA EEGNWKKDTR
PAKPRGFDNR EDAREKALSR LDTRRDGAKP AFGSKPGFGG KPGFKGKPAA GRDGDDAARD
GKPKRMPLGQ SRTANVWMAP GARPVSEKKT ASDEARKSGP RARPDGAPQT KRYGRTKDGA
PTKSLSRHDP DRGQYAGSDD KDLRVKVSRA RDAEGEWIRA EGPDSKPTAR GGRSGEGFGG
KRDGADRGAR PAYGDKPAYG DRPARGERAA PSDRPSRGQW PARGDRPDRG ERPARSDAPA
RSDRPYSGRP TGERAERPTG DRPYDGRPKS RSASGDKPSF GGKPSFGGKP AGKSSFGGKP
SSGGKPGFGG KPGGKPGSAR PGSTRSDAGR GPSRGPSSGP KGKR
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