| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0682 |
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| Symbol | traA |
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| ID | 7388714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 584243 |
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| End bp | 587560 |
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| Gene Length | 3318 bp |
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| Protein Length | 1105 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643650279 |
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| Product | Ti-type conjugative transfer relaxase TraA |
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| Protein accession | YP_002548489 |
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| Protein GI | 222147532 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGATAT ACCATCTCAG TTCAAAGCCC ATAGCCCGCA GCGGCGGCCG CAGTGCGGTG
GCGGCAATCG CCTATCGCAC AGCAACGATG CTGCTGAACG AGCTTGATGG TCTGGTGCAT
GACTTCACCC GAAAGCAGGG GGTGGAGCAT GCGGAAATCG TGCTTCCGGA AGGAATAGAC
GCGGCGTGGG CACTTGATCG GTCCGCCTTG TGGAATGCGG TTGAGCATTC GGAAAAGCGC
AAGGATGCGC GTCTAGCGCG GGAATTTGAG ATTGCACTTC CCCATGAGCT CAGTTCATTG
GAGCGGCTCT TGATGACCCG GGATTTTGCG CGTGATCTGG CAAATCGCTA TGGTGCTGCG
GTGGATTTTG CCATTCATCA GCCGCATGAG GAGGGTGATG TTCGCAACGT TCATGCCCAT
GTGACGATGA CAACCCGAAC CGTGGGGCTG GATGGCCTTG GTGAAAAGAC GCTGATCGAG
CGGGAGAACA AGTGGTTGCT CAACCATGAT CATCCCACAT CGCATATGCA GCTTCGTGAC
ATTCGTCAGG ATTGGGAGAG GCTGGCCAAC CGCTATCTGG TGCGGGCCGG GTTGGATGTT
CGCATCGATC ATCGTTCCAA TCTGGAGCGC GGGCTTGAGA TTGAGCCGAC CGAGCATATG
GGCGTTCATG CGTCGCAGAT GGATCGGCGT GGACTTCAGG TGTCACGTAC TCGGATGGAT
GCTAAGGCAG CGAAAAGAAA CGCTGCGCTG ATCAGAGAGA AGCCCGAGCA GGTTCTATCG
ATCCTGACTG GCGAAAAGAG CGTGTTTGAC CGGCATGATG TGGCACGCGC GTTGCACCGT
TATATTGATG ACCATCAGGC TTTCCAGAAT GCGTTTGCGG CTGTGATGGC ATCGCCTGCA
TTGGTCGAGT TGCGGCCGGA GCAGAATGGC GAGCTTGCAC GCTATTCTAC GCGAGAGATG
CTGGAAATCG AGCACGCGAT GGCCGCAAGT GCTGACCGTA TGAGCCAGTC TCCGCACCAT
GGCGTTCGTC GACATCATGT CGATCAGGCA CTGGCATTCC AGAACGCTGC TATCAAATCC
ATGACGGCAT CGTCGCTATC TTTAAAAGTT GAACGGGGGG AATTGCGCCC CGTTGATCGG
GAACGAGCGA TTGAGCGTTC CGGGTTGAGT GATGAGCAAC GTTTGGCTGT TGCGCATATC
ACCGGACATG CGCAGATCGC AGCCGTGATT GGCTTTGCCG GAGCCGGCAA GTCCACCATG
CTGGCGGCGG CGCGTGACGC CTGGGAACGT CAGGGGTATC GGGTTCATGG TGCAGCACTT
GCTGGCAAGG CGGCAGAAGG ACTGGAGGAA TCGTCCGGAA TTGCCTCGCG GACATTGGCG
TCCTGGGAGT ATGGCTGGCA GGCCGGAAAA GGCCAACTTG GAAAGGGTGA TGTTCTTGTC
ATCGACGAGG CTGGCATGGT GGGAAGTCGT CAGCTTGCGC GGGTTGTCAT GGAGGCCGAA
GCACGCGGCG CGAAGCTCGT TCTTGTTGGT GACCATGAAC AGCTTCAGGC GATCGGAGCG
GGGTCACCGT TCCGCGCGAT AGTTGATCAT GTTGGCGCTG TCGAGCTTTC CGAAATCCGC
AGGCAGAGTG AGGTTTGGCA GCGGCAGGCG TCGATTGCAT TTGCAACTCA TCGGACGGGA
GACGGACTTG CGATTTATGC CGATTGTGGG GCGGTCCACT TCTCGGAGAG CCGGGACGAA
GTGCGGGCGG CTTTGGTGCA GGATTATCTC GAAGATCTGG AGCAACGTTC AGTCGGATCC
AGGATTGCAC TGGCTCATCG CCGTGTCGAT GTCCGGGCGA TCAATGCTGA TATCCGTGCA
TCACTTCAGC AACGTGGTCA GTTGACGCGG GGCGAGGGGG AGCAGGGGAC GCTTGGTCGA
GAATTGGTCT ATCAGACCAA TGATGGGATA CGATCTTTTG CACCGGGTGA CCGGATCGTG
CTGTTGGAAA ACAACCGTGA CCTTAATGTG AAAAACGGCA TGTTGGGAAC GGTGCAGGCC
GTCGAGCCGG ACGCACTACA GATACGGCTC GACGGCGCAG GACAGAACAA TGCCCGTGTG
GTTTCCATAC CTGTGAATAG TTACCAATCC TTTGATCATG GCTATGCGAC GACCATTCAT
AAATCTCAAG GCGCGACAGT CGATCGTGCC TTTGTCATGG CATCCCGCAC CATGGACCGG
CATCTGACCT ATGTGGCGAT GACCCGTCAT CGTCATAATG TGAAACTCTA TGCCAGTCGT
GATGAGCTGA AGGACATGAA GGCGCTTAGC GCCAGCATGA GCCGGTCTGG CGTTAAGGAA
ACAACACTGG ACTATACCGG GGTCTTTGCC GCCCGGCGAG GTCTGGCGGA AGAGCTTGGG
GTCCACAGTG AGATTGCCGT CAACCGATCG TCCGAACGGG CAGCGGAACG ACCTTTAGCT
CGTGACAGCA TAATTGACGG GCACGCTTTC CCTCCGGCGA CCGTTCAGTC CTCCGCCAGA
GTCAAGGGAC CGCTGGGTGA AAAAGGTTTG GAGATTCCAA CCGAGAAGGT CGCGCCACTT
GTGCCAGCAC TCCTATCACA TTCCCGCAGC ATCGAGGACG TTGCCCTCGA AAAGGCGACG
CCCCACTTGG AGCGAGCCAT GGAGGCGGTG CACTCTGTTG GTCGCCACGT TTATGCCAAT
CCAGACAGTG TCGCTGCCAA GCTCATTACC GCCATCATCA GAAATGATAT CAGCCGCCAG
GAATTGGCGA CAGCGGTTGC GGAGTACCCA GAGCAGTTCG GGGCGTTGCG CGGCAAGGCC
GGGTTCCTGG GTGAGAACAA AGAACGCAGG GCTGCACGGT CTTATGCCAA GAGCTTGAGC
CGCCATGTCG CCTTTGCCGG CGAGACCTGG GAGCGTCGGC TCGAGATGGA GCGCCGATCG
GAGGCATGGC TTCGTGAAAA GCGTGATATC ATTGAGGTCC CGGGGCTCAC GCACCGTAGT
GAGGCCCTTC TGAAGCAGTT CGATGCTTTG CCGCAGTCCG AGAAGCCGAA GTTTCTGGAG
GAGCTATCCC AAACGTCAGA AGGTCGTCGT GCGCTTGAGG AGGCGAAGAC CATCACCGCT
GCGCTCGAGC TACGGTTTGG CAGTGCCGAT CCTCGGAACT GGAAGCGGGA TCGTTTGCGG
CTTGGGCCGG AGGTTTCCGT CAAACTTGAT CAGATCAAGG ACATTGCCCG CATAGCTGAT
CGCGTGCAGC GGGCCGAACT TACTCTGCAG TATGAGTTGA AGCGCACCTT GAACAACGGG
TTGGGGTTGG AATGGTGA
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| Protein sequence | MAIYHLSSKP IARSGGRSAV AAIAYRTATM LLNELDGLVH DFTRKQGVEH AEIVLPEGID
AAWALDRSAL WNAVEHSEKR KDARLAREFE IALPHELSSL ERLLMTRDFA RDLANRYGAA
VDFAIHQPHE EGDVRNVHAH VTMTTRTVGL DGLGEKTLIE RENKWLLNHD HPTSHMQLRD
IRQDWERLAN RYLVRAGLDV RIDHRSNLER GLEIEPTEHM GVHASQMDRR GLQVSRTRMD
AKAAKRNAAL IREKPEQVLS ILTGEKSVFD RHDVARALHR YIDDHQAFQN AFAAVMASPA
LVELRPEQNG ELARYSTREM LEIEHAMAAS ADRMSQSPHH GVRRHHVDQA LAFQNAAIKS
MTASSLSLKV ERGELRPVDR ERAIERSGLS DEQRLAVAHI TGHAQIAAVI GFAGAGKSTM
LAAARDAWER QGYRVHGAAL AGKAAEGLEE SSGIASRTLA SWEYGWQAGK GQLGKGDVLV
IDEAGMVGSR QLARVVMEAE ARGAKLVLVG DHEQLQAIGA GSPFRAIVDH VGAVELSEIR
RQSEVWQRQA SIAFATHRTG DGLAIYADCG AVHFSESRDE VRAALVQDYL EDLEQRSVGS
RIALAHRRVD VRAINADIRA SLQQRGQLTR GEGEQGTLGR ELVYQTNDGI RSFAPGDRIV
LLENNRDLNV KNGMLGTVQA VEPDALQIRL DGAGQNNARV VSIPVNSYQS FDHGYATTIH
KSQGATVDRA FVMASRTMDR HLTYVAMTRH RHNVKLYASR DELKDMKALS ASMSRSGVKE
TTLDYTGVFA ARRGLAEELG VHSEIAVNRS SERAAERPLA RDSIIDGHAF PPATVQSSAR
VKGPLGEKGL EIPTEKVAPL VPALLSHSRS IEDVALEKAT PHLERAMEAV HSVGRHVYAN
PDSVAAKLIT AIIRNDISRQ ELATAVAEYP EQFGALRGKA GFLGENKERR AARSYAKSLS
RHVAFAGETW ERRLEMERRS EAWLREKRDI IEVPGLTHRS EALLKQFDAL PQSEKPKFLE
ELSQTSEGRR ALEEAKTITA ALELRFGSAD PRNWKRDRLR LGPEVSVKLD QIKDIARIAD
RVQRAELTLQ YELKRTLNNG LGLEW
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