| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0601 |
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| Symbol | |
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| ID | 7388991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 515606 |
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| End bp | 519433 |
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| Gene Length | 3828 bp |
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| Protein Length | 1275 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643650219 |
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| Product | hypothetical protein |
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| Protein accession | YP_002548431 |
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| Protein GI | 222147474 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGGAC AGCGGTCTCC ATCGCAGAGC TATAGAGCTC CCGGCCAGAT GCCGCCTCAC
CAGGTGGAGA CGCGTCAGGC TGACCCTCGC CCCGTCGGTG CCTCGTCGCT GGATGCCCTG
AGCCGCACGA TCGAGGGGCT GGAGGCGCGG ATCGAAGGTC TGATGAATGG CATCTCCGGC
GGCGTCTCCA GAGATGTTCG CTCGGCAACC AGTGCTTTTT CCGATAAGCC ATTGCAGGCT
TCGGCAGAGA TGCCGCCTGC TGCGACCTCT TCTGTTCCTG CCGACCGGCT CGATCCGTTG
GCCGAAATCC GCGCCCGGCA ACGGGCGTTG GAAGCGGCAC GCCCACCCGC TCCGGGACGG
GCGTCGCTGC GCGACAGCGA TCCGAAATAT CAAGCGCCTG AGAGTGTTTC AGTGCGCCCG
CCCCAGGTGC TGGAATTGGC CCCGCAACTG ATGGCTGGCA GTAGTGCCGC GCCCTTGCCG
GATTTCTATA AGGCCCTGTC TACCCTGCGC GCTGACCTGC GCCAGGATAT CAGCGAGAGC
CTTGCTGGCG AAATCGGTGC TTTGCGCTCC GATATCCAGG ATATCAGGGT TATGGCTGAA
GAAAGCCGTG AAGCCGCTGG CCTGCGTGAG GATTTCATGC GCATGGCCGA CAGCCTGGAG
CGGATCGGCC ATCCCGCCGC GCCCGAAACC GAAGCATTGC GGGCCGATTT CGAGGAATTG
CGCTCGTTGA TGGACGGACT TGCCCGCGAT AGCGGCACAC AGACCATGGA AACCCGTTGG
AGCGCGCTTG AAGCCCGGCT CGACACCATC GCGCCTGAGC GCATCCAGCA GGACCTGTTG
CAGCTTGCCT ACCGGCTGGA TGAGATCAAG CAGCAATTGG GCACGATCGG TGATGTGCGC
TCCGTGCGGC TCCTGGAAGA CAAGCTGGTT GCCATTGCCA AGGCGCTTGA ACATATCGGC
CAGCATCTGG AGCCCAACAG CCAGGCGATG CTGGAGCAGT TCGGCCAGCT CGATCACCGT
CTGGACGAGA TTTCTCGCGC CATTTCCGTT GCCGGACGTC ATGGTGGGCA AGCCACCGAC
CCGCGTCTGA TCGAGCGTCT GGAAGACCGG ATCGCCACGA TTGCCCATCA TCTGGAACTG
ATTTCCGAGC AGACCGCTGG GTTTCCGGCT GGCGATCTTG ACCGCCGTCT CGAAGCGCTG
TCGCTGAAAA TTGAGGATCT GGCGCACCAA CAGGCCGCCC AGCGGCTGGA AGAGCGGCTG
GACGATCTGA CCCGCATGCT GGAAATGTCG CAGCGTGAAA GCCTGCAACC CGAACTGACC
GGCTATCTCT CCGATATCTC CCGCAAGATC GACGCGCTGG ACCATGCTTC GCTGAGCGAC
AAGCTGGCCG AGCAGATTGC CGTGATCGGT AGGCGAATCG ATCAGATCGA TGCTCAGCCG
ACGGTATCAT CGGTGGATGA AAACCTGCTG CGCAGCCTGG ACGACCGGCT TTACTCCATC
GCTGCCCGTC TGGATGAGAC GAGTGCCTCG CCATCCGGTG ATGGCTCCGC CATTGCCGGG
TTGGAACAGC AGATCGCCCA TCTCTCGGCG CTGATCAGCG CCTCGCCCTT GACGGACAAT
GGCCAGGGTG AGCGTATCGA AGGCCGGATG GCGGCCCTTG AGGATTATCT GGCGACCAGC
GACGAGTATA TCGTCGAGGC GGCCCGCCAG GCCGCCGAAG CTGTGATGGA CAATTATGCC
CGCCAAAGCC CGGCCTCCGT TCAGGTGGCG GGACAGGACC AGATTGCCGA AACACTGGGC
GTTCTGGCCG ATCACCTGCG CCACCTGGAA GAAATCAGCC GGGGCGGGGA GGAACGCAGC
CACCGTACCG TCGAGGCTTT GCACCAGACC CTGGTGCAGA TTGCTGAAAA ACTCGACCAG
ATGGACCGCC GGACTGCCAC CGCCAACAGT GAGGAAGATC GCGCCGATAA GTCGGTTGCG
GCTGCGCAGC GGACCGCGTC CGTTGAGACC GACGTGGAAC CGGTTGTTGA CCTTCTTCAG
GCTGAAGACA CTATCGATGC GCCCGCTCAT GCCGAGGCTC GTCCGCAGAG CGATGATGGG
AAGGCCGCGA AACCCAGCCT GATCGCCGGT TTGAGCCGGC GCCTGAAGCC GAAGATCAAG
AAAGCGCAGA CCGAGACCGC GACTCCGGCA AAGGCCGCCG CTCCGCAGCC GCGTCAGATG
ATCGAGGATG CGCCTTCCAT CGATCCCGTT GATATCCTCC CCCCGGAAGA GGCCAATGAA
TTGCTGGAAC CTGGTTCCGG CAAGCCGGAT GTGCGCAAGA TCCTGGAAAA GGTCCGGGCG
CGTCAGCAGG CCGGTTCTGC ACCGGCTGAA CCTGCGCTTG GTGCGGCAGG TGTAAAACCG
GCATCAGCGG ATGACCGGAT GGATTTCATT GCCGCAGCGC GCCGCGCCGC ACAGGCGGCA
GCCCAGGAAA CCGATCGGGC CAGCCGCCCT AGCCGGACAG CCCTTGCTGA CGAAGTCGCT
GGCGGCTCGG CCTTTTCCAG ATATCGTCGC CCGATCCTGA TGGCGGTCGG CGCGCTTTTG
CTGGCGGCCC TTGCCGTCTC GGCAGTAAAG ACGCTTGGCG GCGGCAATGC TCCGGCTCCG
GCCGCGCAAG CGCCTGCCAC ACCGGCACCT GCCAAACTGG CACCCTCTGC GGCCATTGAG
GCACCTTCGA TCCAGCAGGC ACCTCAACAA CCAGTTCGGG CGGTCGAGAT CAAGGCCGAA
GCGCCGCAAT CCCAGCCCGC GGTGGAAAGC ACCGAGGCCG AGCTATCTTC CGCGCCGGTC
ATTCCGGTGA CGTCACCGAC AGGACAGGCC AGCCTTTCCT CCACCCCGAT GGATGGCAGC
CAGACGGTCG CCGGTCTCTC GGCTCAACCG CCGATGCCGG ATGCGGCCCA GGCCGGATTT
ACCGCCCCGA AGACTGAGGC GGTCAAGCCG CTGTTTGAGG TGCCCGCCGA TCTGTCTCCC
GCTTCCCTGG TGACGGCTGC CAAGGCGGGC GAGCCAGCTG CCCTATTCGA AATCGGTTCG
CGCTATATGG AAGCACGCGG CCTGCCCGGT GATGTCTCAC AGGCTGCGGT CTGGTTCCAG
CGCGCCGCCG ATCTGGGGCT GGCGCCTGCT CAATATCGCC TTGCCGGGCT TTATGAAAAA
GGCACTGGCG TTCAGCGCGA CCTGACACGG GCGAAAGGGC TTTACAGCCA GGCCGCTGAC
GCGGGCAATG CCAGCGCCAT GCATAACCTC GCCGTGCTCT ACGCCTCCGG TGGCGATGGC
AAGCCGGATA TGGATGCGGC GGCCAAGTGG TTTGCCAGGG CCGCCGACCT CGGCGTGACG
GACAGCCAGT TTAATCTCGC GGTGCTCTAT GCGCGCGGTA CGGGTGTGAA GCCGGATCTG
GAAGCCTCCT ATAAATGGTT CGCGCTGGCC GCCAGCCAGG GCGACAAGGA TGCCGCTGCC
AAGCAGGAAG AAGTGGCAAG ATCGATGCAG CCTGCTGCAC TTGCTCGTGC CAAGGCGAGC
GTCCAGCAAT GGCAGACAAT GCCAATGAAT GCCGATGCCA ACACGGTCAA CCTGCCGGAT
GAATGGGTCG GCAAGAGCCT GAAGACCGGC AGCGTCGATA TGGAAAAGGC GGTCCGCAAC
ATCCAGGCCA TCCTCAACAA GAACGGCTTC AATGCCGGTG AGCCGGATGG CAAGCTCGGT
GCCCGCACCG TTGCCGCTAT CAAGGCCTTC CAGACCTCGG TGGGCCAGGA GCCAAGCGGC
AAGGTTTCCA ATGAGTTGGT CAAGGCGTTG CTGGCCCACA ACGGGTGA
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| Protein sequence | MNGQRSPSQS YRAPGQMPPH QVETRQADPR PVGASSLDAL SRTIEGLEAR IEGLMNGISG
GVSRDVRSAT SAFSDKPLQA SAEMPPAATS SVPADRLDPL AEIRARQRAL EAARPPAPGR
ASLRDSDPKY QAPESVSVRP PQVLELAPQL MAGSSAAPLP DFYKALSTLR ADLRQDISES
LAGEIGALRS DIQDIRVMAE ESREAAGLRE DFMRMADSLE RIGHPAAPET EALRADFEEL
RSLMDGLARD SGTQTMETRW SALEARLDTI APERIQQDLL QLAYRLDEIK QQLGTIGDVR
SVRLLEDKLV AIAKALEHIG QHLEPNSQAM LEQFGQLDHR LDEISRAISV AGRHGGQATD
PRLIERLEDR IATIAHHLEL ISEQTAGFPA GDLDRRLEAL SLKIEDLAHQ QAAQRLEERL
DDLTRMLEMS QRESLQPELT GYLSDISRKI DALDHASLSD KLAEQIAVIG RRIDQIDAQP
TVSSVDENLL RSLDDRLYSI AARLDETSAS PSGDGSAIAG LEQQIAHLSA LISASPLTDN
GQGERIEGRM AALEDYLATS DEYIVEAARQ AAEAVMDNYA RQSPASVQVA GQDQIAETLG
VLADHLRHLE EISRGGEERS HRTVEALHQT LVQIAEKLDQ MDRRTATANS EEDRADKSVA
AAQRTASVET DVEPVVDLLQ AEDTIDAPAH AEARPQSDDG KAAKPSLIAG LSRRLKPKIK
KAQTETATPA KAAAPQPRQM IEDAPSIDPV DILPPEEANE LLEPGSGKPD VRKILEKVRA
RQQAGSAPAE PALGAAGVKP ASADDRMDFI AAARRAAQAA AQETDRASRP SRTALADEVA
GGSAFSRYRR PILMAVGALL LAALAVSAVK TLGGGNAPAP AAQAPATPAP AKLAPSAAIE
APSIQQAPQQ PVRAVEIKAE APQSQPAVES TEAELSSAPV IPVTSPTGQA SLSSTPMDGS
QTVAGLSAQP PMPDAAQAGF TAPKTEAVKP LFEVPADLSP ASLVTAAKAG EPAALFEIGS
RYMEARGLPG DVSQAAVWFQ RAADLGLAPA QYRLAGLYEK GTGVQRDLTR AKGLYSQAAD
AGNASAMHNL AVLYASGGDG KPDMDAAAKW FARAADLGVT DSQFNLAVLY ARGTGVKPDL
EASYKWFALA ASQGDKDAAA KQEEVARSMQ PAALARAKAS VQQWQTMPMN ADANTVNLPD
EWVGKSLKTG SVDMEKAVRN IQAILNKNGF NAGEPDGKLG ARTVAAIKAF QTSVGQEPSG
KVSNELVKAL LAHNG
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