Gene Avi_0366 details

Gene Information

• Locus tag: Avi_0366
• Symbol: rhtB
• ID: 7387810
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 314351
• End bp: 314983
• Gene Length: 633 bp
• Protein Length: 210 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643650036
• Product: RhtB family transporter
• Protein accession: YP_002548251
• Protein GI: 222147294
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1280] Putative threonine efflux protein

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCACCA CAACGTCACT TCTTGCCTTT GCCCTGATCT GCCTTGGCAT GGCGCTGACG 
CCCGGCCCGA ATATGGTTTA TCTCGTGTCA CGCTCCATCT GTCAGGGGCC GATGGCCGGA 
CTGATTTCGC TGGGTGGTGT CGCGCTGGGC TTCCTGATCT ACATGCTGAT GTCGGTGCTG 
GGGATTACGG TGTTGCTGAT GGCCGTGCCC TATGCCTATG AGGCGCTGAA ACTGGCCGGT 
GCAGCCTATC TCGCTTACCT GGCCTGGCAG GCGGTCAGGC CGGGCGGGCG TTCACCCTTT 
CAGGTGCGCG ACCTGCCGAA GGACAGCCCG AGACGGCTGT TTGCCATGGG CCTCGTGACC 
AATCTCCTCA ATCCGAAGGT GGCCGTTCTC TATCTGTCGT TGCTGCCGCA ATTCATCGAT 
CCGGCCAATG GCAGCGTTTT CATGCAATCA CTATTGCTCG GCCTCACCCA GATCGCCATC 
GGCACCACGG TCAATGGGAT AATCGCGCTG ATGGCCGGCT CCATCGCCCT GTTTCTCAGC 
CGCCGTCCGC TATGGATCAT GGTGCAGCGC TGGCTGATGG GGACCGTACT GGCCGTGCTG 
GCGGTGAGAA TGGCGACACA GGCGCAGCGG TGA 

 

Protein sequence

MPTTTSLLAF ALICLGMALT PGPNMVYLVS RSICQGPMAG LISLGGVALG FLIYMLMSVL 
GITVLLMAVP YAYEALKLAG AAYLAYLAWQ AVRPGGRSPF QVRDLPKDSP RRLFAMGLVT 
NLLNPKVAVL YLSLLPQFID PANGSVFMQS LLLGLTQIAI GTTVNGIIAL MAGSIALFLS 
RRPLWIMVQR WLMGTVLAVL AVRMATQAQR