Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0321 |
Symbol | oxyR |
ID | 7387775 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 277878 |
End bp | 278762 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643650001 |
Product | transcriptional regulator LysR family |
Protein accession | YP_002548216 |
Protein GI | 222147259 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.916325 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAGATC TGAATTTTAA TCATCTCCGC TATTTCTGGG CGGTCGCGCA TGAAGGCAGC CTGACGCGGG CCGCACAGCA TATGAACCTG TCGCAGTCAG CTTTGTCTGT GCAGATCCAG AAGCTCGAAC ACCAGATGGG TCATGCGCTG TTTGAGCGCG TCGGCAAGAA GCTCGTGCTG ACAGAGGCCG GACAGATCGC GCTGGATTAT GCCGATACGG TGTTCAAGGC CGGTGACGAA TTGATGAGCA CGCTCAGTGG CCGCCCGACC GCCAGCCGCC AAGTGCTGCG GGTCGGGGCG CTGACGACTC TGTCGCGCAA CTTTCAGCTG GAATTCCTGC GCCCGCTGGT CGGTCGCTCC GACGTGGAAC TGATTGTGCG TTCCGGCAAT ATGCGCGATC TCCTGGCTCA ACTCGAAGCC CATGCCGTCG ATGTGGTGCT GGCAAACAGC GCTGCCCCGC GTGATGCACG CTCACTGCTG CGCAATCATC TGCTGAACGA GCAGCCGGTC AGCCTGGTTG GACGCCCCCG GCCTGATGGG CAGAGTTTTA AATTTCCCGA CGACCTGCGC ACCGAGCCGT TGCTACTGCC CAGCCTCGAC AGCGATATCC GCGTGGCCTT TGACCGGATT CTCGAAATGG CCGGAATACG ACCCATCATT CTCGCCGAGG TCGATGATAT GGCGATGCTT CGCCTTCTGG CACGTGAGCG CGAAGGGCTC ACGCTGGTGC CGCCGATCGT CGTGCGCGAC GAACTGGAGG CGGGAGTGCT CATCGAACAC TGCCGCATTC CTGAAGTCAT CGAAAGCTTT TATGCAATCA TTCAGAAACG ACGCTTTCCC AATACGATGC TGGCCGAACT GCTGGCCAGC GGTAGGGTGT TATGA
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Protein sequence | MRDLNFNHLR YFWAVAHEGS LTRAAQHMNL SQSALSVQIQ KLEHQMGHAL FERVGKKLVL TEAGQIALDY ADTVFKAGDE LMSTLSGRPT ASRQVLRVGA LTTLSRNFQL EFLRPLVGRS DVELIVRSGN MRDLLAQLEA HAVDVVLANS AAPRDARSLL RNHLLNEQPV SLVGRPRPDG QSFKFPDDLR TEPLLLPSLD SDIRVAFDRI LEMAGIRPII LAEVDDMAML RLLAREREGL TLVPPIVVRD ELEAGVLIEH CRIPEVIESF YAIIQKRRFP NTMLAELLAS GRVL
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