| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0215 |
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| Symbol | ctpF |
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| ID | 7387532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 193764 |
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| End bp | 195050 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649921 |
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| Product | component of type IV pilus |
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| Protein accession | YP_002548137 |
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| Protein GI | 222147180 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4963] Flp pilus assembly protein, ATPase CpaE |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.263569 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACGA TCAAATACGA TATCGCCGGA TCGAAAGAAG ACGGCCTGGC CGCAGAACCG
GTGAGAACCG GTAATCTCGA GCAATTGCGG CCCTTGCCAC GCATTTCCGT GCATGCGTTC
TGCATCTCGG ACAGTGTGCT GGCGGTGATG GAAGAGGCCG CCCGCGACCG TCGCATGGCC
AAGGTCAGCA TGCGGGTGAC CAGCGGCGGC ATTTCAGCGG CGGTCAATAT GTTTGCCGGG
GCACCGACCC CCAATCTGGT CATTCTGGAA ACCGATGCGA AGCCCGAGAA CCTTCTCTCC
GAGCTGGCGC CGCTGGCCGA TGTCTGCGAT CCCTCGACCC GGGTCATCGT CGTCGGACGC
TATAACGACA TCGCTCTTTA CCGCGAATTG ATGCGCAATG GCGTCTCCGA TTATATCGTT
GCGCCGGTCA GCATGGCCGA CGTCATCGGG GCCTTGTCAT CGATCTTCAT CGACCCCGAT
GCCGAGCCAC TTGGGCGCAG TATCGCCTTC ATAGGCGCAA AAGGCGGCGT CGGTTCCTCC
ACCATCGCCC ATAATGCGGC CTTCATGATC GCCTCGCTGT TTTCCTCCGA AACCATCCTG
GCCGATCTGG ACCTTCCCTA TGGCACGGCC AATATCGATT TCGACCAGGA CCCGGCCCAG
GGCGTAGCCG AAGCGGTCTT TGCTCCAGAG CGCCTGGACG AAGTGTTTCT TGATCGCCTG
CTGACCTCCT GTTCACAGAA CCTGTCCCTG CTGGCCGCCC CATCCCTGCT GGACCGTGCC
TATGATTTTG AGCGCGGCGC CTTCCTGCCG CTGTTGGAAA CCCTGCAACG CAGCGCCCCG
GTTGCGGTGC TGGACCTGCC GCATAGCTGG AACGAATGGA CGCTGGCGCT GCTGTCGGAA
GTGGACGAGA TCGTCCTGAC CTGCGTGCCG GATCTTGCCA ATTTGCGCAA CGTCAAGAAC
CTGCTCGATG CGCTGAAGCG GTTGCGACCA AACGACAAGG CACCGCATCT GATCCTCAAT
CAGGCTGGCA TGCCGAAACG GCCGGAAATT TCGCCCAGCG ATTTCTTCGA ACCGCTGGAC
ATGCAGCCAG CCGCGATCAT TCCTTTCGAT ATTCAGCTGT TTGGCAATGC CGCCAATTCC
GGCCGGATGA TCGCCGAGAT CGATGCGAAA AGTCCGACGG CGGAGACGTT CTCGCAGCTC
GCCCATCTCA TCACCGGACG GGTCAGTATC AAGAAGCCGA AAAAAGCGGG TCTCAGCACG
ATATTCGCCA TGTTGGCGCG CAAGTAA
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| Protein sequence | MNTIKYDIAG SKEDGLAAEP VRTGNLEQLR PLPRISVHAF CISDSVLAVM EEAARDRRMA
KVSMRVTSGG ISAAVNMFAG APTPNLVILE TDAKPENLLS ELAPLADVCD PSTRVIVVGR
YNDIALYREL MRNGVSDYIV APVSMADVIG ALSSIFIDPD AEPLGRSIAF IGAKGGVGSS
TIAHNAAFMI ASLFSSETIL ADLDLPYGTA NIDFDQDPAQ GVAEAVFAPE RLDEVFLDRL
LTSCSQNLSL LAAPSLLDRA YDFERGAFLP LLETLQRSAP VAVLDLPHSW NEWTLALLSE
VDEIVLTCVP DLANLRNVKN LLDALKRLRP NDKAPHLILN QAGMPKRPEI SPSDFFEPLD
MQPAAIIPFD IQLFGNAANS GRMIAEIDAK SPTAETFSQL AHLITGRVSI KKPKKAGLST
IFAMLARK
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