Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0213 |
Symbol | ctpH |
ID | 7387530 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 191228 |
End bp | 192232 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643649919 |
Product | component of type IV pilus |
Protein accession | YP_002548135 |
Protein GI | 222147178 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4965] Flp pilus assembly protein TadB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCATCA ATGTGCTCGC CATCGTGCTT CTTGCAGCCC TCGCGGCGGG ATCGCTGGCC TATGTCCTGT TGTTTTCACG GGTGCAGGCC GACAAGAAAA CCGCCACACG CCTCGCCCGG GTGAAAAATG CGGAAGCCGA TACCGCCAAG AAACAGGTGG CGCGCGACCG GGTTCAGGAG CTTTCCAAGC GACGCAAGTC CGTGCAGGAC ACGCTGAAGG AAATTGAGCG CAAGCAGAAT GAGAAAAACA AGAAAATCTC CAGCCAGTCG CTGAAACAGC GGCTCGGCCA GACCGGCCTT GATGTCAGCC TCATCCAGTT CAGCATTGCC AGCACCACCC TTGGTCTGGT GTTTTTCTGC CTGTGCTTTG TCCTCGGCAT GTCTCTGTTT GTGTCCTTGG GTATCGCCTT CACGGCTGGT GCCGGCCTGC CGCGCTGGAT CGTCAGTTTC CTGATCCGCC GGCGTCAGGA AAAATTCCTG ACCGAATTTC CCAATGCGCT GGACGTGATG GTGCGGTCGA TCAAATCCGG CCTGCCGCTC AATGATGCCT TGAGGATGAT TGCCGTCGAT GCGCAGGAGC CGGTCAAGAC CGAGTTTCGC CGCGTGGTCG ATGCGCAACA ACTGGGCATA ACGGTGCCGG AAGCCTGCGG GCGTATGTTC AACTCCATGC CTTTGCAGGA GGTCAGCTTC TTTGCCATCG TCATCGCCAT TCAGTCCCAG GCGGGCGGCA ATCTCTCCGA AGCCCTATCC AACCTATCGA AAGTGCTGCG TGAGCGGCGC AAGATGAAGG CCAAGGTCAG CGCCTTGTCG ATGGAGGCCA AGGCATCAGC GGTCATCATC GGCGCGTTAC CCTTCATCGT CGCCTTTCTC GTCTACATTT CCTCTCCAGC CTATATCATG GTGCTGTTTA CCGACCCGCG CGGCCATATG ATTCTGGGGT TCTCGGCGTT CTGGATGTCT ATCGGCATTT TCGTCATGCG TAACATGATC AATTTTGACA TTTGA
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Protein sequence | MTINVLAIVL LAALAAGSLA YVLLFSRVQA DKKTATRLAR VKNAEADTAK KQVARDRVQE LSKRRKSVQD TLKEIERKQN EKNKKISSQS LKQRLGQTGL DVSLIQFSIA STTLGLVFFC LCFVLGMSLF VSLGIAFTAG AGLPRWIVSF LIRRRQEKFL TEFPNALDVM VRSIKSGLPL NDALRMIAVD AQEPVKTEFR RVVDAQQLGI TVPEACGRMF NSMPLQEVSF FAIVIAIQSQ AGGNLSEALS NLSKVLRERR KMKAKVSALS MEAKASAVII GALPFIVAFL VYISSPAYIM VLFTDPRGHM ILGFSAFWMS IGIFVMRNMI NFDI
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