| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_3778 |
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| Symbol | |
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| ID | 3678805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | + |
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| Start bp | 4703790 |
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| End bp | 4707092 |
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| Gene Length | 3303 bp |
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| Protein Length | 1100 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637719128 |
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| Product | chemotaxis sensory transducer, phytochrome sensor |
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| Protein accession | YP_324278 |
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| Protein GI | 75909982 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG2203] FOG: GAF domain
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.275371 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATCG CAAAATATAA CAGCAAGGAA AATGAGAAAG TTGCTACAGC TTCTCAATTA
GAAAATCCTA ACTTAGCCAA TAACGTCCAG AAAGAAGAAA TCGGAGTCAA TGAAAGCGCC
CAACAAGTAA AAATGTGGCG ACAGCAGTTG CAAGATATCA TCATGCAGAT GCGCCAAGTA
TCAGAGTGGG ATGCAGTTTT AAAAATCACT GTGGTGAAAG TTAGAGAAAA AATTGCTTGC
GATCGCGCGT TAATTTATCA GTTTACTTCA CCTGAGTCTG GTAAAGTTTT AGCAGAATCA
AGAACTCTTG GTTGGACACC AACTATGGGG GAATTTCTTC CAGGGATTAC CTTTGGTTTA
GACACGAATC AAGACTATAT AGAGCCAATA ACTATTAACA ACGTTACACA AATCCAACTT
ACTCCCTATC AAAAACAGTT ACTGGATAAA TTCCAAATTA AAGCTAGTTT AAGTTTGCCA
ATAGTTGCAG ACGGTAAAGT ATGGGGTTTG CTGGTAGTCA CTGGCTGCGT CAATCCTAGA
AACTGGCAAG AAACAGAAAT TACACTATTA ACCCAAGTTA GTACAGAGTT AACCTATAGA
TTGCAGAATT TTGAATTTCA AACTCAATTA CAACTGCAAA ATCAGGCTAA ACAAGCTGTA
TCTAAAGTGA TGGAAAAAAT CTTACGGCTA TCAAATACCG ATAAGATTTT CCAAAGCACC
ACTCAAGAAA TCCGTCAATT GTTGAAGTGC GATCGCGTCG CTGTTTACCG TTTCAATCCT
GATTGGAGTG GGGAATTTGT CGCGGAATCT GTAGGTAGTG GTTGGGTAAA ACTAGTAGGC
CCTGATATCA AGACTGTTTG GGAAGATACC CACTTACAAG AAACCCAAGG TGGACGTTAT
CGCCATCAAG AAAGTTTTGT CGTTAACGAT ATTTATCAAG CTGGTCATTT TTCTTGCCAT
CTAGAAATTT TAGAACAGTT TGAAATCAAA GCTTACATTA TTGTTCCTGT CTTTGCTGCG
GAAAAATTAT GGGGTTTATT GGCAGCTTAT CAAAACTCTG GTACCCGTGA GTGGTTAGAG
TGGGAATCTA GTTTTTTGGC TCAAGTAGGG TTGCAATTTG GCATAGCTAT TTCTCATGCA
GAATATTTAG AACAAACGCG ATTGCATTCT GAGCAAATGA TGCAGATTGC TGAACAGGAA
AAAATATTTT CCAGAATAGT TAACCGTATT CGCCAAGCTT CAGATGTAGA AACTATTTTT
AGAACCACCA CTCAAGATGT ACGTCAATCA TTACGCTGTG ATCGCGTCGC CGTTTATCGT
TTCAATTCTG ATTGGGGTGG TGAGTTTGTC GCTGAGTCAG TTGCTTCTGG ATGGACAAAA
GTGGTGGGGC CAAATATTAA AACTGTTATA GATGATACCT ACCTCCAAGA TACTAAAGGT
GGACGCTATA CCAGAGGAGA ACATCATATT GTCAATAATA TCTATACAGC AGGTTTTGCA
CCCTGTCATA TCGAGACATT AGAGCAGTTT GAAGCTAGAG CTTATATCAT TGTGCCTATC
TTTTTTGGAG ATAAATTATG GGGCTTGCTG GCAGCATATC AAAACTCTAG CTCCCGCGAG
TGGCAATCTT GGGAAGTCAA CTTTTTAACT CAAATTGCGT TGCAATTTAG CCTTGCTAAA
TCCCAATTAG ACTATCTAGA ACAGGTACAA ATAAAATCTG AGAAAATAGC TCAGATAGCA
GAACAGGAAA AATCCTTTAC TAAGATAGTT AACCGCATTC GTCAAGCGGT AGATATCGAT
GATATTTTCA AAATTACTAC CCAAGAAGTC CGGCAATTAT TAAGGAGCGA TCGCGTCGCT
GTTTATCGCT TCAATCCTAA TTGGGGTGGT GAATTCGTAG CAGAATCAGT AGGTAATAAT
TGGGTCAAAC TTGTAGGGAA TGATATTAAA ACTGTTTGGG AAGATACTTA CATCCAAGAA
ACACAAGGCG GTAGATATGC CAAAGGGGAA ACCTTTGTTG TCAATGATAT TTCTCAAGCT
GGTCATTCTC CCTGCCATTT GGAAATTCTA GAACAATTTG AAGTTAAAGC ATATGTAATT
GTTCCTGTTT TCTGTAATGA ACAATTATGG GGATTGCTAG CAGCCTATCA AAATTCTGGC
CTCCGTGATT GGGAACAATC CGAAGTCAGC CTATTAGCAA GGGTTGGTGA CCAATTAGGA
TTAGCGCTGC AACAGACAGA ATATCTGCAA CAACTGCAAG CAAAATCGGC ACAGTTAGCA
GAAGCCGCAG CCAGAGAAAA AGCAGCCAAA GAGTTACTGC AACAGCGTTC TATTCAACTA
CTAATGGCTG TGCGACCAGC TTTAAATGGT GATTTGACAG TCCGCGCACC AATTACAGAA
GACGAACTAG GCACAATCGC CGACGCTTAC AATAACACCT TGCAAGCCTT GCGGCAAATT
GTCTTACAAG TGCAAACATC TTCTCAACAA GTCGCCCAAA CCTCCAGTGA TAGCAATGCT
TCACTTGCAG GCTTGAATAA CTTAGCCAAA CAACAATCCA TAGAAATTAC CACAGCCTTA
GGTGAAATTC AACAGATGCT CGACTCTACC CAAGCTGTGG TAACTAGCGC CGAGTTGGTA
CAAGTGGCGG TACAACAAGC AAACAAAACC GTCGAATCGG GCGATGCAGC AATGAACTTA
ACAGTTCAAG CCATCCAAGG GATTCGAGAG ACTGTAGCGC AAACAAGCAA AAAAATTAAA
CGCCTGAGTG AATCTTCGCA AAAAATCTCC AAAGTGGTGA ACTTGATTAG TAGTTTTGCC
ACCCAAACAA ACGTCTTGGC TTTGAACGCC GCTATTGAAG CCACCCGTGC AGGTGAATAT
GGTAAAGGTT TCGCAGTTGT AGCCGATGAA GTTCGTTCTT TATCTCGCCA GTCAGCCGCC
GCCACAATTG AAATTGAAAA ATTAGTCCAA GAAATTCAGG CGGAAACTGG AGAAGTAGCG
GTGGCGATGG AAACCGGGAT TCAGCAGGTA GTAGAAGGGA CGAATTTTGT CAGTGAAACA
AGGCACAACT TAAATGCGAT CGTTTCTGCA ACTGCCGAAA TTAGCCAACT AATTCAACAA
ATTACTGATG CAACTCAAAA ACAAATGGGG CAATCTGTAT TAGTCACAAA TTCGATGAAA
GATGTGGCAG AAATCGCCAA AAAAACCTTT GCAGAATCAC AAGATATTGC CACCGTTTTC
CAAGACTTAT CAGGTATGGC ACAAGATTTG TTAACAACCG CTAGTAAGTT CAAAGTGAAT
TAA
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| Protein sequence | MTIAKYNSKE NEKVATASQL ENPNLANNVQ KEEIGVNESA QQVKMWRQQL QDIIMQMRQV
SEWDAVLKIT VVKVREKIAC DRALIYQFTS PESGKVLAES RTLGWTPTMG EFLPGITFGL
DTNQDYIEPI TINNVTQIQL TPYQKQLLDK FQIKASLSLP IVADGKVWGL LVVTGCVNPR
NWQETEITLL TQVSTELTYR LQNFEFQTQL QLQNQAKQAV SKVMEKILRL SNTDKIFQST
TQEIRQLLKC DRVAVYRFNP DWSGEFVAES VGSGWVKLVG PDIKTVWEDT HLQETQGGRY
RHQESFVVND IYQAGHFSCH LEILEQFEIK AYIIVPVFAA EKLWGLLAAY QNSGTREWLE
WESSFLAQVG LQFGIAISHA EYLEQTRLHS EQMMQIAEQE KIFSRIVNRI RQASDVETIF
RTTTQDVRQS LRCDRVAVYR FNSDWGGEFV AESVASGWTK VVGPNIKTVI DDTYLQDTKG
GRYTRGEHHI VNNIYTAGFA PCHIETLEQF EARAYIIVPI FFGDKLWGLL AAYQNSSSRE
WQSWEVNFLT QIALQFSLAK SQLDYLEQVQ IKSEKIAQIA EQEKSFTKIV NRIRQAVDID
DIFKITTQEV RQLLRSDRVA VYRFNPNWGG EFVAESVGNN WVKLVGNDIK TVWEDTYIQE
TQGGRYAKGE TFVVNDISQA GHSPCHLEIL EQFEVKAYVI VPVFCNEQLW GLLAAYQNSG
LRDWEQSEVS LLARVGDQLG LALQQTEYLQ QLQAKSAQLA EAAAREKAAK ELLQQRSIQL
LMAVRPALNG DLTVRAPITE DELGTIADAY NNTLQALRQI VLQVQTSSQQ VAQTSSDSNA
SLAGLNNLAK QQSIEITTAL GEIQQMLDST QAVVTSAELV QVAVQQANKT VESGDAAMNL
TVQAIQGIRE TVAQTSKKIK RLSESSQKIS KVVNLISSFA TQTNVLALNA AIEATRAGEY
GKGFAVVADE VRSLSRQSAA ATIEIEKLVQ EIQAETGEVA VAMETGIQQV VEGTNFVSET
RHNLNAIVSA TAEISQLIQQ ITDATQKQMG QSVLVTNSMK DVAEIAKKTF AESQDIATVF
QDLSGMAQDL LTTASKFKVN
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