Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_2861 |
Symbol | |
ID | 3681464 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 3553608 |
End bp | 3555077 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637718208 |
Product | secretion protein HlyD |
Protein accession | YP_323369 |
Protein GI | 75909073 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.515359 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGCGT ACATAGAAGT TCCGATGATT GGTAAAGTTA AATACCCGGC GCGCTGGCTG GTGGGACTAG CAGCTGTTGG TGTTTTAGTA GTTGGCTCGG CCACAACCTA CAAGATAGTT CAACAGGGAA ATAGTAAGCA AGATGTAACG CAATTAACGG TTCCGGTAGA AGCTAAGAAT GTCACTATCA GAATTACCGC CAGTGGTAAA GTTGTGCCGG TGCAGAGTGT GAATCTTAGC CCGAAAAACC CTGGTGTGCT GGCGCAGTTA TATGTAGAAC AAGGCGATCG CGTGGAGCAA GGACAGATCA TTGCCCGGAT GGATGTGGGT GAGATCGAAG CTCAAATTGC TCAATATCGC GCCAATATAG CCCAAGCCCA AGCCCAGTTA GATGAAGCTA GGGCGGGGAA TCGTCCTCAA GAAATTGCTC AATCTAAAGC GCGTCTAGCC CAGGCTCAAG CTCAATTAGC TGAGTCTGTG GCCGGGAATC GTCCCCAAGA AGTTGCTAAA GCCCAATCTC AAGTTGATGC AGCCCAGGCC AGGGTAAATT ACACATCGGA ACAGGTAAAA CGTTATCAAT ATCTCTTTAA CCAAGGGGCA GAGAGAAAAC AATTATTTGA TCAAGCCGTT AGTGAAGACA AAAGTGCGAG AGCTAATTTA GCAGAAGCAC AAAAGCAATT ATCCTTATTG CAAAGTGGCA CTCGGAGTGA GGTGATCTCT GCAAAGGAAG CTGCTGTCAC CGAAGCACGG GCAGCATTAG TACTTTCACA AGAAGGTAGC CGCCCCGAAG AAATTGCCCA ACGTCAAGCA GCTGTGAAAG CAGCCCAAGC ACAGCTAGCA GCCGCCCAAG TTAGATTAGC AGATACGATT ATTCGCGCGC CTTTCTCTGG CATAGTCACT CAGAAGTACT CCAACGTGGG TGCTTTCGTC ACTCCTACAA CCTCCGCTTC CACCAGTGCT TCTGCAACTT CTAGTTCCAT TGTGGCGTTA GCCAGGGGTG TAGAAATCTT GGCGCAAGTC CCAGAAGCTG ACATTGGCCG CATTAAACAA GGGCAACAAG TAGAAATTGT GGCAGATGCC TATCCTGATG AAGTTTTTCA AGGGCGTGTA CGTTTAATTG CCCCGGAAGC AGTCATAGAA CAGGGTGTGA CATCCTTTCA AGTGCGGGTA GCCATCGATA CGGGAGTGGA TAAACTACGA TCTGGCTTAA ATGTAGATTT AACTTTCTTG GGCGATCGCG TCAATAATGC TCTGGTATTA CCGACAGTTT CCATTGTCAC AGAAAATGGC AAAACAGGTG TCTTAGTACC AGATGCCCAA AATAAACCCC AGTTTCGAGA AGTCACCGTT GGCGCACAAA TCCAAGACCA AACTCAGGTT TTATCTGGCT TGAAAACAGG CGATCGCGTG TTTGTTGACT TACCCCAAGA CTACAGAATC CAACAGGCCA AAGAAAAGGC AAATCAATGA
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Protein sequence | MTAYIEVPMI GKVKYPARWL VGLAAVGVLV VGSATTYKIV QQGNSKQDVT QLTVPVEAKN VTIRITASGK VVPVQSVNLS PKNPGVLAQL YVEQGDRVEQ GQIIARMDVG EIEAQIAQYR ANIAQAQAQL DEARAGNRPQ EIAQSKARLA QAQAQLAESV AGNRPQEVAK AQSQVDAAQA RVNYTSEQVK RYQYLFNQGA ERKQLFDQAV SEDKSARANL AEAQKQLSLL QSGTRSEVIS AKEAAVTEAR AALVLSQEGS RPEEIAQRQA AVKAAQAQLA AAQVRLADTI IRAPFSGIVT QKYSNVGAFV TPTTSASTSA SATSSSIVAL ARGVEILAQV PEADIGRIKQ GQQVEIVADA YPDEVFQGRV RLIAPEAVIE QGVTSFQVRV AIDTGVDKLR SGLNVDLTFL GDRVNNALVL PTVSIVTENG KTGVLVPDAQ NKPQFREVTV GAQIQDQTQV LSGLKTGDRV FVDLPQDYRI QQAKEKANQ
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