Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_2543 |
Symbol | |
ID | 3682428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 3143388 |
End bp | 3144803 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637717888 |
Product | secretion protein HlyD |
Protein accession | YP_323053 |
Protein GI | 75908757 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.467529 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACAGC AAACTTACCC AGCGACAAGC CAGTTAATAA ATACAAAATT ACAATTTAGC GGTGAAATAT CTGCCCACAG ACAGATATTT CCTGACTGGC AATGTGCAAA ACATAGCTTA TTTGTTGCTT GTTTGTTGAG TGTGGGTGTA CTAACAGCAA GTTGCGGTTC TTTACCCAAA GAAACAGCCG AAGCCCAATC TCAGCAACGT AGAGGTGGAG AACGAGGTGG GGTAGCACCT GTAGATGTGG CGATCGCCCG TAGAGAGAGG CTAGAGACAC AACCAGAGTA TACAGGTACA ACCACACCAT TTAGAACAAT ATCGTTGCGA TCGCAGGTAG AAGCCAGACT CTTAGCTTTG AACTTAGATG TAGGTGACAC AGTTAGACGA GGGCAGAACG TCGGACAACT AGATGACATC ATATTATCCA CAGACCTCAA GCAAGCAGAA GCCGAACTCG CAGCTTTGGA ATCAGAAGTA GCTAGAGCGA CAACCCAGGT AAGTAATGCC CGCACCCAAG TGGAACGGGC AAGACTCGAA GTAGTACAGG CTGAAGCAGA TGCCCAACGT CAAGAGAGAT TATTTAAAGA AGGAGCTATA TCCGAGCAAG CCGCCGAGCA AGCACGGACA CAAGCAAAAA CAGCTACTCA AGCACTCCGC GCAGCTACTG AGCAAGTCCG AACCGAAGAA CAAGCAGTTG CGGCTGCCAA AGGTAGAGTA TTTGCCCAAA AAGCCGTAGT TGCCCAAACA AAAGAACGCC GCTCATATAC ACGCCTCACA TCCCCCCTTA ATGGTGTGAT CACCGAGAGA GTCACAGAGC CAGGTAATCT CTTACAAGCT GGAGGAGAAG TTTTAAAAAT TGCTGACTTG AGCCAAATTA AAGTAGTAGT GCAAGTCTCC GAATTAGAAC TAGGACAAAT TCAAGTCGGA CAATCTGTAC AAGTACGCTT AGATGCCTTC CCAGACCGAG AAATCACTGG TAGAGTCACC CGTATTTCCC CCACCGCCGA TGCTACAGCT CGTTTAATAC CAGTAGAAGT AGTAATTCCT AATAGTCAAG GCAATATTGG TAGTGGATTG CTAGCAAGAG TTAACTTTGC CAGTCAAACT CCAGAACGAG TGGTAGTCTC ACAAACAGCC ATTCAAAGGG AAGGCAGAAA CCAGCAATCC GCCCCAAAAA CCCCAAGACA ATCACAAAAT CAAAACGGCA CACTGTACGT AGTTACGGAT AGCCAAGGCA AGCCAACTGT CACAGCCCGT ACAGTCACTT TAGGAAAAAG TGCTGATGGC AAAGTAGAAA TTTTATCTGG CTTACAACCT GGAGAGCAAT ACGTCGCACG TAGTGGTAGA CCCTTAAAAG ATGGGGAAAA TGTACGTCTT TCAATTCTTT CAGAGCGAAA CCCTGCGAGG AATTAA
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Protein sequence | MKQQTYPATS QLINTKLQFS GEISAHRQIF PDWQCAKHSL FVACLLSVGV LTASCGSLPK ETAEAQSQQR RGGERGGVAP VDVAIARRER LETQPEYTGT TTPFRTISLR SQVEARLLAL NLDVGDTVRR GQNVGQLDDI ILSTDLKQAE AELAALESEV ARATTQVSNA RTQVERARLE VVQAEADAQR QERLFKEGAI SEQAAEQART QAKTATQALR AATEQVRTEE QAVAAAKGRV FAQKAVVAQT KERRSYTRLT SPLNGVITER VTEPGNLLQA GGEVLKIADL SQIKVVVQVS ELELGQIQVG QSVQVRLDAF PDREITGRVT RISPTADATA RLIPVEVVIP NSQGNIGSGL LARVNFASQT PERVVVSQTA IQREGRNQQS APKTPRQSQN QNGTLYVVTD SQGKPTVTAR TVTLGKSADG KVEILSGLQP GEQYVARSGR PLKDGENVRL SILSERNPAR N
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