| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_0642 |
|---|
| Symbol | |
|---|
| ID | 3678671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 809721 |
|---|
| End bp | 811262 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637715970 |
|---|
| Product | DEAD/DEAH box helicase-like |
|---|
| Protein accession | YP_321161 |
|---|
| Protein GI | 75906865 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.770015 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.292104 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTAT CGTTTCCCGA ACTAGGCATT TCCCAAGAAC GCGTAGAACA CTTAGAAAAA
CTTGGTTTTA CAGCACCAAC AAACATTCAA GCCCAAGCCA TCCCCCAACT GTTGTCAGGA
CGTGATGTAG TTGGTCAATC ACAAACAGGT ACAGGTAAAA CAGCAGCATT TTCACTGCCA
ATTTTAGAGC GGTTAGATCC TCAACAAAAA GCAGTACAAG CCATAGTTTT AACCCCAACC
CGCGAATTAG CAATTCAAGT CCACGATGCA ATGGCTCAAT TCATTGGTAA CAGTGGATTA
CGGACTTTAG CAATTTACGG TGGTCAATCA ATTGACCGTC AAATGCTGCA ACTCAAACGC
GGCGTGCATA TCGTTGTCGG TACACCAGGG CGGGTAATTG ACTTGCTAGA ACGGGGTAAC
CTGAAGCTAG ATCAAGTCAA GTGGTTTGTC TTAGATGAAG CCGATGAAAT GTTGAGCATG
GGCTTTATTG ACGATGTAGA GAAAATTCTT TCTCAAGCAC CCCAAGAGCG TCAGACAGCT
TTATTCTCAG CTACCATGCC ACCATCAATT CGGATGTTGG TCAACAAGTT TTTGCGATCG
CCCGTCACAG TCACCGTCGA GCAGCCAAAA GCCACCCCCA ATAAAATCAA TCAGGTAGCT
TATCTCATCC CCCGTCACTG GACAAAAGCC AGAGCCTTAC AGCCAATTCT GGAAATGGAA
GACCCAGAAA CAGCTTTAAT CTTTGTCCGC ACCAGACGTA CAGCCGCCGA ACTCACCAGC
CAACTGCAAG CAGCCGGTCA CAGTGTAGAT GAATATCATG GTGACTTGTC TCAACAAGCA
CGGGAACGGT TATTAACTCG GTTCCGTAGT CGTCAAGTGC GCTGGGTAGT AGCAACCGAC
ATTGCTGCAC GCGGTTTAGA TGTCGATCAA CTATCTCACG TAATCAACTA CGACCTACCC
GATAGCGTCG AAACCTACGT CCACCGGATC GGTCGTACTG GTCGTGCTGG TAAAGAAGGT
ACAGCAATTA CCTTAGTGCA ACCATTTGAG CGTCGCAAAC AGCAAATTTT TGAACGCCAT
GTCCGCCAAA ATTGGCAATT GCTTTCCATT CCCACACGGG CGCAAATCGA AGCACGCCAC
ATCCTGAAAT TGCAAGAGCA AGTCAGAGAA GCCTTAGCTG GTGAGCGTTT AGCTTCCTTC
TTGCCCATTG TCAGCGAATT GATCGAAAAA TATGATGCTC AAGCGATCGC CGCAGCCGCA
CTACAAATCG CTTACGATCA AACTCGTCCC GCTTGGTTAA GCACGGATGC CGAAATCCCT
GAAGAAGTCG CATCCACTCC CAAACCTAAA CTAGGCGGCA AACGTCGTGA GTTTTCCGGT
GACAGAGGTC GTTCCAACTG GAACAAATCA GACAATAACA ACAGCGACGA CGAAAGACGC
GGTACTCCCA AACCAAAATT ACGGACTAGC CGTCGTGAAA CTTCCGCTAC ACCTAGCAAT
CCTAAGTTGG GTTCACCTGC TGCGAGAGAA TCAGCTTCTT AG
|
|---|
| Protein sequence | MNLSFPELGI SQERVEHLEK LGFTAPTNIQ AQAIPQLLSG RDVVGQSQTG TGKTAAFSLP
ILERLDPQQK AVQAIVLTPT RELAIQVHDA MAQFIGNSGL RTLAIYGGQS IDRQMLQLKR
GVHIVVGTPG RVIDLLERGN LKLDQVKWFV LDEADEMLSM GFIDDVEKIL SQAPQERQTA
LFSATMPPSI RMLVNKFLRS PVTVTVEQPK ATPNKINQVA YLIPRHWTKA RALQPILEME
DPETALIFVR TRRTAAELTS QLQAAGHSVD EYHGDLSQQA RERLLTRFRS RQVRWVVATD
IAARGLDVDQ LSHVINYDLP DSVETYVHRI GRTGRAGKEG TAITLVQPFE RRKQQIFERH
VRQNWQLLSI PTRAQIEARH ILKLQEQVRE ALAGERLASF LPIVSELIEK YDAQAIAAAA
LQIAYDQTRP AWLSTDAEIP EEVASTPKPK LGGKRREFSG DRGRSNWNKS DNNNSDDERR
GTPKPKLRTS RRETSATPSN PKLGSPAARE SAS
|
|---|
| |