| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_0549 |
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| Symbol | |
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| ID | 3682321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | + |
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| Start bp | 693519 |
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| End bp | 695870 |
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| Gene Length | 2352 bp |
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| Protein Length | 783 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637715877 |
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| Product | 3'-5' exoribonuclease, VacB and RNase II |
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| Protein accession | YP_321068 |
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| Protein GI | 75906772 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.442665 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTTT CAATCGCTAC ACTCCTTGCC AATTTCACCG ATGATAAATT GGTGGCTCGC
AAAGTTTTGG AAAAGAAACT GGGATGCGAG GACGAAGACA GTTTAGAAAA GCTCCACATC
GCCCTGGAAG TGTTGGAGAG AATTGGGGTT TTGGCAAAAG AACGCGGGAA GTATCGCCGT
ATTTCCGAGG AAGGAATGAT CGAAGCAAAG CTACGTTGTT CTAGTAAGGG CTTTTGCTTT
GCCATTCAAG ATGTGGAAGG GGCTGAGGAT ATTTATATTC GTGAAAGTCA TCTGAGTAAT
GCTTGGAATG GCGATCGCGT ATTGGTACGT GTTCTCAAGG AAGGCAGTCG TCGCCGTTCT
CCTGAAGGAG AAGTTAAGCT GATTTTGGAA CGTTCCAATC ACACTTTACT GGCACGGATT
AAGCAAGTAG AAGGCGGTTT TCGTGCTGTC CCTCTAGATG ATCGGCTGCT GTTTGAGTTG
AAAATTCAAG CCAACAAACT CAAACTAGAA GAGGCCATTG ATCACCTCGC TCACGTCGAA
GTACTGCGTT ATCCTCTAGC CCAGTATCCG CCAGTGGGTC GTGTAGTCCA AATTTTGGGC
AGCGATGCGG AAGCGGCGGC GGATATAGAT TTAGTTACCT GTAAACATGA TTTATCACGT
AATTTCCCTG AGTCAATATT AGATGCAGCC GCTAAGTTAC CCAAAAGGCT ACTTAAAGCA
GACCTAAAAA ATAAACTAGA TTTACGCAAT CTATTTACCT TTACTATTAC TGGCATCAAT
AGCGACACGA AGGTAATAGA AAATGCCATT AGTTTAGAGA AAACAATAGC TGGCAATTGG
CAATTAGGTT TTCATATTGC TGATGTATCT CACTACGTCC AACCAGATGA ACCTTTAGAC
AGGGAAGCAA TCAAACGGGG TCGGTCGGTG TATTTGGGAG AATTGGTATT GTCCATGCTA
CCGGATACTG TAGCCGATCG CGCTTCCCTC GTAACTGGGA GCGATCGCCT AGCACTGTCT
TTTTTAATTA CGATTTCTTC CCAATCTGGA GAAGTTTTGG AATGGGAAAT TCAGCCCAGT
GTCATTAACG TAGATAGCAA CATCAGTAAA CAGCAAGCAG AAGCGATTCT CCAAGGTGCA
GCCACGAAAA AAGACTCGCC ACAGGTTATA GAACGGCTAC AAAACTTAAC TACGATCGGG
CAAGCCATCA AGGAATCCCG TCTAGCCCGT GGTAGCTTAC AGCTAAATCT GCCGTCGAAT
CACAACCCCT ACTATGATGA GGGTAGTTTA GGAGCTGTAC TGGTGAATGA TTCCCCAGTG
CGATCGCTAC TGATGGAATT GGTGTTACTA GTTAATGAAT TAATCGCTAC CCATTTGAGT
GCTTTAGGTG TCCCCGCTAT CTGGCGCACT CAAGGCACAC CAGATTCGGA AGATGTCCAA
GAAATGCTGA AACTGGCAAT TAATTTAGGG GTAGAACTAG CACTAGAACC AGATGTAGAT
ATTGAACCCT TAGATTATCA ACAGTTAACC AAGGCTTTTG CTGAGTCTCC CTCAGAGCAG
GTGTTAACTT ATCTTTTGCA AGATACCCTC AAGCCTGCGG TGTACAGTAC TACCAAAGCC
ACCCACTTTG GTTTGGCACT ACCACAATAC ACCCACTTCA CAGCCCCTCT ACGCCGTTAT
CCAGACTTGC TGATGCAGAG GGTGTATTAT CAGTTACTAG AACACGGACG CGATCGCCGT
AATACTAGAG TCAAAGAACG GGTTAACCTG CGCCACTCCT CCAGCCACTC CGAGATTAAC
TGGAATGTGT TAGCCCCAGA GTTGCAGCAG GAAATGCAAA GCGACTTGAC CAGGGTGATT
ATCCAAATCA ACGACAGGGA AAAAGAAGTC CAAGAAGCTG AAGCCGATTT AGCTGGACTG
CAAAAAGCCC AACTGATGAA ACAGCGTATT GGTCAAGTAT TCCAAGGCGT AATTACTGGC
GTACAATCCT ACGGTTTCTT TGTAGAAATC GAAGTCCCAG CCGCCGAAGC TGCAACCAAT
CCGGGTGTAC CTTTGCGCGT GGAAGGGTTA GTACACGTCA GTTCTCTCAA GGATGACTGG
TATGAATACC GCGCCAGACA ACAGGCACTC TTTGGCAGAA AAAATCGTGC TTCTTATAGA
TTAGGCGATC GGGTTTCCGT ACAAGTCAAG AGTGTCGATT ACTATCGCCA GCAAATCGAT
TTAGTCACTG TTGGTAGTGA TGGTTTAGTT AAAAATTTAG GTGTCGGTAA TGTCAATGGT
GATATTTCCG ATATTTACTT ACCAAACGAC CTGGAATCTG ATGATTTAGA CTCTTATGCA
GATGAAGAAT AA
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| Protein sequence | MEFSIATLLA NFTDDKLVAR KVLEKKLGCE DEDSLEKLHI ALEVLERIGV LAKERGKYRR
ISEEGMIEAK LRCSSKGFCF AIQDVEGAED IYIRESHLSN AWNGDRVLVR VLKEGSRRRS
PEGEVKLILE RSNHTLLARI KQVEGGFRAV PLDDRLLFEL KIQANKLKLE EAIDHLAHVE
VLRYPLAQYP PVGRVVQILG SDAEAAADID LVTCKHDLSR NFPESILDAA AKLPKRLLKA
DLKNKLDLRN LFTFTITGIN SDTKVIENAI SLEKTIAGNW QLGFHIADVS HYVQPDEPLD
REAIKRGRSV YLGELVLSML PDTVADRASL VTGSDRLALS FLITISSQSG EVLEWEIQPS
VINVDSNISK QQAEAILQGA ATKKDSPQVI ERLQNLTTIG QAIKESRLAR GSLQLNLPSN
HNPYYDEGSL GAVLVNDSPV RSLLMELVLL VNELIATHLS ALGVPAIWRT QGTPDSEDVQ
EMLKLAINLG VELALEPDVD IEPLDYQQLT KAFAESPSEQ VLTYLLQDTL KPAVYSTTKA
THFGLALPQY THFTAPLRRY PDLLMQRVYY QLLEHGRDRR NTRVKERVNL RHSSSHSEIN
WNVLAPELQQ EMQSDLTRVI IQINDREKEV QEAEADLAGL QKAQLMKQRI GQVFQGVITG
VQSYGFFVEI EVPAAEAATN PGVPLRVEGL VHVSSLKDDW YEYRARQQAL FGRKNRASYR
LGDRVSVQVK SVDYYRQQID LVTVGSDGLV KNLGVGNVNG DISDIYLPND LESDDLDSYA
DEE
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