| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apre_1328 |
|---|
| Symbol | |
|---|
| ID | 8398120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaerococcus prevotii DSM 20548 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013171 |
|---|
| Strand | - |
|---|
| Start bp | 1418903 |
|---|
| End bp | 1419559 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 644995675 |
|---|
| Product | Lytic transglycosylase catalytic |
|---|
| Protein accession | YP_003153072 |
|---|
| Protein GI | 257066816 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000594554 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTG TTAAATTTAT AGGGAAAGTT TTGGGCTTTA TTGTCCTTGC TATAGGCATA
TTTTTCGCTA TAGTCTACGG CCTAATAGCC TATCAAACAT CCAGAACTCA AATATCCTAC
CAAGATCAAA TTTATGAATA TTCCGAAAAA TATAATGTAG ATCCACTCCT AACAGCGTCA
ATCATCAAGG TTGAATCTGA CTTTGACAAT AAGGCCCAAA GCCACCAAGG AGCTCACGGC
CTAATGCAAT TATTAGAAGA TACGGCCAAG CACTCTGCAG ATGTCGTAGG GATTGATTAC
TATCCAGAAA AGTTAAACGA TGTCGACTAC AACCTAGATT TGGGGGTGGG ATATTTTGAC
TATCTTTATA GATATTATAA CAACAGAGAC CTAGCCCTTG CAGCCTACAA TGGGGGAGTG
GGCAATGTTG ATAGCTGGAT TAAGGAAGGT ACTCTTGATA AGGACAATCC TGACCCTTTA
AATATTCCTT TCGAAGAAAC TAGGCAATAT GTCACAAAAG TGAATGCTAA TTATGAAGTT
ATGAAAAAGT TTTACAAGGA TGGCCTTCCA AGCGAGGAAG AAATTTCTAA CCTAAGGGGC
CTAAGTTTTA GAAACTTTGA GATTTTTATT AAAGATTTCA TTAGAAATAT AAGATAA
|
|---|
| Protein sequence | MKVVKFIGKV LGFIVLAIGI FFAIVYGLIA YQTSRTQISY QDQIYEYSEK YNVDPLLTAS
IIKVESDFDN KAQSHQGAHG LMQLLEDTAK HSADVVGIDY YPEKLNDVDY NLDLGVGYFD
YLYRYYNNRD LALAAYNGGV GNVDSWIKEG TLDKDNPDPL NIPFEETRQY VTKVNANYEV
MKKFYKDGLP SEEEISNLRG LSFRNFEIFI KDFIRNIR
|
|---|
| |