| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apre_1210 |
|---|
| Symbol | |
|---|
| ID | 8397999 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaerococcus prevotii DSM 20548 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013171 |
|---|
| Strand | - |
|---|
| Start bp | 1289476 |
|---|
| End bp | 1290207 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644995555 |
|---|
| Product | protein of unknown function DUF28 |
|---|
| Protein accession | YP_003152955 |
|---|
| Protein GI | 257066699 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0217] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01033] DNA-binding regulatory protein, YebC/PmpR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGAC ATAATAAATG GAGCAAGATT AAAAATAAAA AAGGAAGTGA AGATGCCAAA
AAGGGCAAGA TCTTTACAAA ACACGCTAGA AATATAACAG TTGCAGCCAA AGAGGGTGGA
ACAAACCCAG ACTATAACCC TGCTCTTAAA ACTGCTATAG AAAAAGCCAA GGCAGATAAC
ATGCCAAATG ATAACATAGA TAGAGCTATC AAGAAAGCAG CAGGAGATGA TGCTTCAGAT
AATTTCGAAA GAGTAATCTA TGAAGGATAC GGACCAGGTG GAGTTGCTGT AATAGTAGAC
TGCCTAACAG ATAATAAAAA TAGAACAGCT CCTGATGTAA GACATGCCTT CGACAAAAAC
GGTGGAAATC TTGGAACTGA CGGATCTGTT ATGTTTATGT TCGAAAGAAA GGGCGATATC
ATAGTAGGAA AAGAAGGAAA AGACTTCGAT GAATTCATGA TGGATGCCCT AGAAGCAGGC
TGTGAAGACG TCAAAGAAAT GGGAGAATAC TTCGAGGCTA TCACAGATGT AAATAGCTTT
AACGATGCTA ATGACAAACT AAAAGAATTA GGCTATAAGA TAGAAAGTGC AGATATATCT
TACCTTGCAA ACAACATGAT TAAAGTAGAA GAAGATCATG TTGATAAGCT AAACAAGCTA
ATCGATACCC TAGAAGATAA CGACGATGTC CAAGAGGTAT ACTCAAACTG GGATGATTCT
AGTGAGGAAT AA
|
|---|
| Protein sequence | MSGHNKWSKI KNKKGSEDAK KGKIFTKHAR NITVAAKEGG TNPDYNPALK TAIEKAKADN
MPNDNIDRAI KKAAGDDASD NFERVIYEGY GPGGVAVIVD CLTDNKNRTA PDVRHAFDKN
GGNLGTDGSV MFMFERKGDI IVGKEGKDFD EFMMDALEAG CEDVKEMGEY FEAITDVNSF
NDANDKLKEL GYKIESADIS YLANNMIKVE EDHVDKLNKL IDTLEDNDDV QEVYSNWDDS
SEE
|
|---|
| |