| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1276 |
|---|
| Symbol | |
|---|
| ID | 8414156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1433516 |
|---|
| End bp | 1434958 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 645022868 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_003180291 |
|---|
| Protein GI | 257785074 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAA ATGCCGAGGC ACCTGAGATG CAAAAGTCGT TGAGTCTATT CAACTTCTTT
ACCATCGGAT TTGGTGCGAT CATTGGTACC GGATGGGTGC TCCTGGTAGG CGATTGGATG
GTTCTTGGTG GAGGACCATT CCCCGCGATG ATCGCATTTG CAATTGGCGC AATTTTCCTT
GTACCAATTG GATGTGTTTT TGGCGAGCTC ACTGCTGCTA TTCCAATTTC TGGTGGCATC
ATTGAGTACG TCGACAGGAC ATTCGGTCGT CCATTGGGCT TCTTAACCGG CTGGATGCTC
CTTCTGGGTA ACGCTCCACT GTGCCCTTGG GAGGCAATCG CTATTTCCAC GCTTCTCACC
GACCGTTTTG GTGCATTCCC TGTTCTTTCT TGGCTGAGGT CCGTTAAGCT TTACACTATT
CTTGGTGCAG ATGTTTATCT GTGGCCAACA GTCATCGCTC TTTGCTTTGC TATCCTGGTC
ATCTTCCTTA ACTTCAAGGG AGCTGGTGCA GCAGCTAAGC TTTCGAGCTT CCTCACTAAG
GCTCTTCTTA CTGGTATGAT TCTTGCAATG GTTATCTCCT TTGCAACTGG ATCTCCAAGC
AACGGCCTCC CACTCTTCTC CCGGGCAACT GAGGTTGCTA GTGGCGAGGG CACAAAAGCT
ACTAGCTTCT TTGGTGGCAT TATTGCAGTT CTTGTTATGA CTCCATTCTT CTACGCTGGT
TTTGACACCA TTCCACAGCA GGCAGAAGAG GCTTCTGCTG ACCTTGACTG GAAGAAGTTT
GGTATCATTC CTGCACTTGC ACTCATGGCA TCTGGTCTCT TCTATCTCAT CTGCATCTAT
GCATTCGGAA CCATGATTGA CTGGCACGAG TTTGTTAAGT CTTCCGTTCC TGCACTTGCA
GTTCTCGAGC GCATCAACCT GTTCTTCTAC ATTGCAATGC TCATCATTGC AACACTTGGA
CCTCTGGGCC CAATGAACTC CTTCTTTGGT GCTTCTACTC GCCTGATGCT TGCTCTTGGT
CGTAAGAAGA TGCTTCCAGA GTCCTTCGCA AAGATTGACC CTAAGTCTGG CGCACCTCTG
ACTGCAAACT TGTTCATGGC TGGTCTGACC CTCATTGGTC CATTCCTTGG TCGTAACATG
CTTGTTCCTT TGACCAACGT TGCTTCTCTC GGCTTCATCT TTGCATGCAC CATGGCTGGC
GTTGCCTGCC TGCGTCTGCG TCAGACTGAG CCAGACCTGC CTCGTCCTTA CAAGGTCAAC
GGTGGTATCG CAGGTATCAT AGCTGCAATT CTTGCTGGTA GTATCATCAT CGCCCTGATG
GTTGTTCCTT TCAGCCCTGC AGCGCTGAAG CCAGTTGAGT GGATTATCAC TATTACTTGG
ATTGTTATTG GTATGGTCAT CTTCATGATC TTTGGTCGTC AGTTTGAGAA AGCGGCAGCA
TAA
|
|---|
| Protein sequence | MAENAEAPEM QKSLSLFNFF TIGFGAIIGT GWVLLVGDWM VLGGGPFPAM IAFAIGAIFL
VPIGCVFGEL TAAIPISGGI IEYVDRTFGR PLGFLTGWML LLGNAPLCPW EAIAISTLLT
DRFGAFPVLS WLRSVKLYTI LGADVYLWPT VIALCFAILV IFLNFKGAGA AAKLSSFLTK
ALLTGMILAM VISFATGSPS NGLPLFSRAT EVASGEGTKA TSFFGGIIAV LVMTPFFYAG
FDTIPQQAEE ASADLDWKKF GIIPALALMA SGLFYLICIY AFGTMIDWHE FVKSSVPALA
VLERINLFFY IAMLIIATLG PLGPMNSFFG ASTRLMLALG RKKMLPESFA KIDPKSGAPL
TANLFMAGLT LIGPFLGRNM LVPLTNVASL GFIFACTMAG VACLRLRQTE PDLPRPYKVN
GGIAGIIAAI LAGSIIIALM VVPFSPAALK PVEWIITITW IVIGMVIFMI FGRQFEKAAA
|
|---|
| |