Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0916 |
Symbol | |
ID | 8413786 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 1025666 |
End bp | 1028011 |
Gene Length | 2346 bp |
Protein Length | 781 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 645022503 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_003179936 |
Protein GI | 257784719 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.557683 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGCAGATA ATAAGCTGAG TGTGAGACGT GTTGAGGGAG TTGTTGACGG AACCGTTGCT GCAACTCTGT CTCAGTTGCT ACGACTGACC AGTGATGCAG TCATCGTTTT TAATATGGAG GGCATAGTTC TTCTCGCCAA TGAGGAAGCC GAGACCTTAT TTGCTAAGGC TGACGGTACA ATTGCTGGCC TGGATGTGCG CTTTTTGTTT GCCCCTGCAA ATCAAGAAAA TTTGCAAGAG GCGTTTTCTG TAGAGTCGTT GCCGTTTGCG ATTGATGGTT CTACCTCTAT GGTGACTGCT CCCTCGCAAG ATGGTACGTC GCAGGTGCTG AGTGTGCGCG CAGATTATGT TGGCGCACCT ACGCAAGCCA TTGTTTTGTC AGCATCTAAG CTTCGTGATC TGTCTAGTTC TATGCACGAT GATGAACGAA TGGTGTTGGA CCTTCGACGC GCCAATAAGA GGCTCTCAGG AGCGCTCCAG ATTGTTTTGG ATACGCTTGA CTCGGAAGAT ATGAGTCAGC TTATTGAACG TGTGTTAGAA GAGCTCTCAG AGACTGTTGA GGCCGATGGC GCGCTTATTT ATCTTGCCGA GCAAGACGGG TATCACCTTC ATGGTGTTAC GGAGTCACTG AGAAGTGCAT TACTGAGCGG TATTCCTCGC TATTTTGCAT TTAACAGCTC TTTGGAGCGT TTGTTGTTTT ATTCTGAGCA CGCGCTCCGC TTGCACACTG TGCCCCTGAA CTCGGATGCT CTTAAGCAGG GAAGGGTTAA AAAGCGCAAT TTAGTTAACG AGGAAACACG CGAGGTCATA ACCGTTGACG CAAGTCATCT TCCTCCGTTT ACCAGTTTTC TTGTGGTGCC TGTGTGGTTT GGTGGTCACA TTGTTGCCTT GATTGAGGTG GGTTGGGAGC GCAAGCGTGC GCTTCTGGTC GAGGATGCAA GACTTCTTGA CTCTATTGCA AATTACCTCT CAGTGCAGCT TGTAGGTGCG TTGTCAGCCA TGAGGACGCA GCGTAGAGAT ATGCTTCGTG AGGCATTAGC TCGCGTACGC CAAGGATTAC TCCATAGCAC TGCAGAGGGT GAGAAGATCT CTGGTGAACG TCTGCAGCAG GTTATGAGGT CGGTGGGAAC TGATCTTAAT ACACAGGTTT TCTCGATAGA TTGCTGCGAG GTAACGGGCA ACATTACACT TCATATGCTT GACGCTGAGC AAGGATTTGC TGATGCTCAG GACGGTGGCA CGCAAAGTGT GGCTGAGGCG GATAATGACG CACAAGTCAC AGCTGAGCAG CAAGATAGTG GCAAGCAGAT TGCGCTTCCA TCGACGGTTG AAGGACTCAA GACAGGGGAG GGCGAGGCAT CAGTTAAAGA GGTTGAGCTT GATTCTGAGC TGAGCCGAGC GCTTGCCGCA CAAGGTTTGC CTTGCAAGGG AGCTGTGCTT TTCTTGGGCA GGTTTGCAGG AGAGCAGCAT ACCTGGCTTT TCTTGCGAGA AGAAAATGCT GAGCCCTTGA GCGACATTGA GTTTGATTTC TTAGATCGTG TGATGCTTCT TGTTCACTCG CTGGTAGTTG GCGCCGAAGA GAGTCAGCAG AACAAACACA TTTCGCAGGC GCTGCAGTCA GGCATGAAGA ATGAATTGCA ACAGGTCGAG GGAATCTCTG CCGAGGGAAT TTATTCATCT GCAACCGCCG ATGCGTTTGT TGGTGGCGAT TTTTACAGCA TGATTAAGCT GCCAGGCCGT CGCGCGTGTA TCATTATGGG CGATGTTTCT GGTAAGGGTA TTGAGGCGGC ATCCATTTCA TCCGCAGTTA AAACGGCACT TTCTGCTTAT GCATGGGAAG GAAGAACCCC TGCTCGCATG GTGGCAACCC TGAACGAATT CTTGTTAGGT TTCTCAAGAG TAGAGACGTT TGCAACGCTT TTTGTTGGCA TTGTTGACCT TACTACCTCA TCACTTATGT ACTGTTCTGC TGGCCATCCA CCTGCAATTC TGGTGTCTGC TCAATCGGGT GACGCTGAGC TTTTGGATGT ACAGTCGGGC GTTGTGGGCG CGTTTCATGA CATGGAGTAC AAAAACGGTA CCGTTTGCTT GCATGAGGGC GATATCCTGC TACTTTACAC TGATGGAACC ACAGAGGCAC GTAGTCCTGA AGGCGCTTTT TTTGGTGAGA CTGGCTTGCG CGACATGATT ATGAATGAGG TTCCTCGTGG GTTTGATGGC TTGCTAAATA GGTTTTTGAA TACGCTTGAC CGCTATACTG GCAGAAGACT TGACGATGAT GTTGCAATGG TTGCTTTGCG CTTTGACGAG CTTGGTAATG CCGATTCTGG CAAGAAGAGC AACTAG
|
Protein sequence | MADNKLSVRR VEGVVDGTVA ATLSQLLRLT SDAVIVFNME GIVLLANEEA ETLFAKADGT IAGLDVRFLF APANQENLQE AFSVESLPFA IDGSTSMVTA PSQDGTSQVL SVRADYVGAP TQAIVLSASK LRDLSSSMHD DERMVLDLRR ANKRLSGALQ IVLDTLDSED MSQLIERVLE ELSETVEADG ALIYLAEQDG YHLHGVTESL RSALLSGIPR YFAFNSSLER LLFYSEHALR LHTVPLNSDA LKQGRVKKRN LVNEETREVI TVDASHLPPF TSFLVVPVWF GGHIVALIEV GWERKRALLV EDARLLDSIA NYLSVQLVGA LSAMRTQRRD MLREALARVR QGLLHSTAEG EKISGERLQQ VMRSVGTDLN TQVFSIDCCE VTGNITLHML DAEQGFADAQ DGGTQSVAEA DNDAQVTAEQ QDSGKQIALP STVEGLKTGE GEASVKEVEL DSELSRALAA QGLPCKGAVL FLGRFAGEQH TWLFLREENA EPLSDIEFDF LDRVMLLVHS LVVGAEESQQ NKHISQALQS GMKNELQQVE GISAEGIYSS ATADAFVGGD FYSMIKLPGR RACIIMGDVS GKGIEAASIS SAVKTALSAY AWEGRTPARM VATLNEFLLG FSRVETFATL FVGIVDLTTS SLMYCSAGHP PAILVSAQSG DAELLDVQSG VVGAFHDMEY KNGTVCLHEG DILLLYTDGT TEARSPEGAF FGETGLRDMI MNEVPRGFDG LLNRFLNTLD RYTGRRLDDD VAMVALRFDE LGNADSGKKS N
|
| |