| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0870 |
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| Symbol | |
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| ID | 8413736 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 965753 |
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| End bp | 969250 |
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| Gene Length | 3498 bp |
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| Protein Length | 1165 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 645022453 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_003179890 |
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| Protein GI | 257784673 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.129938 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGATA CACGTTATAC GCCTGGTCAA GAGAAGACCA TCAAGACGCT TGATAAGCCT
CTTTTTGTTG CAGCAGGTGC TGGTTCAGGA AAAACTTTTA CGCTTACACA GAGAATTGTG
TGGGCTTTAA AAGAAGGCTC TGGAGCTGAT GGAAAGCCGT ACTTGAGTAG TCTTGACCAG
GCATTGATTA TTACGTTTAC CAATGCTGCA GCTACAGAAA TTAAGGAACG CGTTAGGGAA
GCTTTAGAAA AAGAAGGCCT GCATAGCGCT GCGTTGCAGG TTGATGATGC GTGGATTAGT
ACTATCCACG GTATGTGTAG CAGAATCTTA AAGATCCATG CACTTGATTT GGATCTTGAT
CCTGAGTTTG AAATCATTGA CGACATGACC AGAAATCAGC TGGTTACCAT ATCTATTGAA
GAAGTACTCA GGGAGCTTTC TCAAGATGAA AGCTATGCTG AATTCCTTTC TACTTACGCA
GGGAACAGAG ATGCGCTGAA GTCCCGTATT GAAACGCTGA TCTCGTATGC TCAGTCATCT
CCTCTAGGAA TAGATTCTAT TTCGTTTGTA GGGGACAGCT CTGACCTGGA TGTTCTAAAA
GCAGAGCTTG AGAGTTTATG TGGTGCACTT GAAGCGTTCA AGGCCGCAAT TGCTGAAAAG
AAACCAGATG AAGCAGAGCA GCTACAGAGT GTTCAATCTG AGCTTTTAAG TAAATTGCAG
CAACACTTGG TCCTCTCGCT CACTGATTTT GACCAGGCGT TTTGGGAGGC TCTGGGAAAA
GCCGTCAAGG CCGTTCGATC TTCAAAAGAA ATAAAAATGG TAAGAGATGA AGCTGTGTAC
CAGCTTAAAG TTTGTAGCTC TTTATTTGGG CTTATTCAGG ATGTGTCTGA GGGTCAACGT
CTGAAAGATG TTACAGAGCA GGTCTACAAG CTCTTTAAAC AGAAGAAACT TGCTATTGGC
GGCCTTGATA ACGATGATCT TTTGCATCTA ACGGCAAAGG TGTTTGAAGA GCATCCGGAG
ATTGCGGCTG TTTACACAGA TAAATTCAAG CTTGTAATGG TTGATGAGTT CCAAGATACA
GACCAGCAGC AAGTGCAGAT GATTAAGAGT CTCTCGGGTA AAGATGCCCA ATATCTCACA
ACAGTTGGTG ACGCGCAGCA GTCAATTTAT CGTTTTCGCG GCGCTGATGT TGATGTGTTC
TTCAGACGTC AAGCAGAGGT TCCAGAAGAT TTACAACCCC GTCTTGTAGA TAATTTCCGC
AGCCATAATG AGATTTTGCG ATTTGTTGCA AAAGTTTGTA GTGCTGATGG CATGATTGCT
GACTTTATGG ATCTGTCCGC TGGGCGAGAA GAGCCTACAA CTCCGTTCAT TGCTCATTCA
CCACGAGTGT ATTTTGAAGT AACAAAATTT GTAAAGTCAG GAAGCTCTAA GCCGGGCGAT
GATATTTCAA GAAAACAACT TGTCGCCCAT CAACTTGCGG ACAGAATTAA CACGCTTATG
CAGGATGAGA ATATCCAAGC AAAAGATGTT GCAATTTTGA TGTCATCGGT TAAAGAGGCA
CAGCCTTATA TTGAGGCACT TCGTACCTTT GGAATTGAAA GCGTGGTTTC TGGAGCTTCA
ACTTTTGGTG AGCAGCCTGA GGTTGAACTG ATTGGCAGTC TTTTACAGAC ACTCGCAAAT
ATGTACGATT CATACGAAGG ACTATTTCCT GTACTCTCGA GCGAAATTTT TAATCTTGAT
GCGTCAGATT TGCTTCTACT AGGTACTAAT TTTGGAGAAA ATGGACAGAA GATTACTAAT
AGAGATATCG CGGAGTCATT GGTAAATGAC GCGTTTAATC CACCTTTTGA GATAAGTCTG
AAGCTTAAAA ATGCTTTAGA GATTTTGAGT GATGCTCGTA GCTCCCTCTC AAATAATAGA
GTTTCAGACG TTCTTAAAAA AGTAGTTCTT GATGCTGGAT GGATTTCTCG CCTTCAAAAT
AAGGGCAATG AGGGACAGTC AAAGATTGCA AATATTTTTG CAGCTCTTGA GCAGATTGAT
AGTTTGCAAA AGGAGTTAAG CGTTGGTATT GCTTCAGTTG CAAAGGCATT TAGTGAGTGG
TGCGGTACGG CTAAAGAGTC ACCAAAGGTG CTTCATAGCA GCACTCAAAA TGCAGTCACG
TTTATGACTA TTCACGCATC TAAGGGATTG GAATTTCCTG TTGTTGCTGT TGTGGGGGCA
GTTTCTGGTC CTAAGGCATC AGCTGGCGGT GAACCATTTT TGCATGTTAA AAAAGATAAT
TCGTATCAAA TTGCATTCTC TAGCAGTTCT AAAAAACTCA AAAATTTGTA TGACGGCTGT
CATGAGGTTC CTACAAGTAT TGATGAATGT AAGAATCTTC TTAAGTGGAG AATGTTCTTG
GAGGCTCAAG AGAATGAGGC TGAAGAGCAG GAGCAAAATC GCTGTTTGTA TGTTGCTCTA
ACACGCGCTC GAGAAGCAGT CATTCTTACC TCAACTATTG ATCTCACTAA AGAGGGAATT
AGTCCCCGTT ATACACGCAA GATTACAGAT GCCTTGTTTG AAGAGACACC ACTTTCTGCT
GGTGAGCATT TATTTGAATA TGGCGGCAAT CTTGCTGGTT GCATGCGTGT GGTTGAGGGT
TCTGGCAAGA AGGATGAGCC GATTCAGGTT GAAGGTTTAG AGTTGGTTGA ACCTTCTGAT
GTCAACCCAA GAGAAGAGAA ATACTCTCAA GCTGTTGAAA CGTTTGACAT TTATGAAAAG
GCAGAACTAA GCGTTGCCTC AGAGACTACG TATGACCAGC GAAAAGGCTT CTTTAGTTAT
TCATCAGCTC ACCAACAAAT GGCAGAGAAT TTTGAGAGTG AGAATAACCA AAAGCTTGAG
GAAGAATTCA AGGGAGTAAG TCAAGGACAT GAGGCAGACA ACCCTCAACC AGCAACTGAA
GCTTCCGTTG TTTTGCCTGG CACATTAGCT GATGATGGAG TAGACCCAAC CAGCCTTGGT
TCAGCCTTCC ACGAGCTTGC TCAGATTATG GTTGAGACTC AGTCTAAGGT TGATGAACAA
ATTATTGATA GATTGTGCTT GAAGAATAGC GTTCCTCAGC GTGCGGTATC ACGAGTCAAA
CAAGCACTTG AATTGTGGAG TAACTCTGAA ATAAGACAAG AAGCTTTAGC TCATGATGTG
GTTATTGCGG AGTCTCCCTT TACGCTGCAG GTTGATTCTG AATATGGGAA CTATGTAGAA
GGAGCTATCG ATCTTCTCGC TTATAATAGG GGAAGCAAAG ATGCGCTGGT AGTTGACTAT
AAAACGGGTG ATAAGGGCCT TAGTGCCGCT CAAATTTATG AGCATCATCA GATGCAAGCA
AACTTCTATG CTTACGTTTT GATGCAACGT GGATTTACTA AGGTTGAGTG CGCGTTTGTC
TGTGTTGAGA TTGAAGAGGC TGGTCAGCCA CACGTTGCTC GATACGCATT TGATGCAAAC
CATCAACCAC AGCTTTAA
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| Protein sequence | MADTRYTPGQ EKTIKTLDKP LFVAAGAGSG KTFTLTQRIV WALKEGSGAD GKPYLSSLDQ
ALIITFTNAA ATEIKERVRE ALEKEGLHSA ALQVDDAWIS TIHGMCSRIL KIHALDLDLD
PEFEIIDDMT RNQLVTISIE EVLRELSQDE SYAEFLSTYA GNRDALKSRI ETLISYAQSS
PLGIDSISFV GDSSDLDVLK AELESLCGAL EAFKAAIAEK KPDEAEQLQS VQSELLSKLQ
QHLVLSLTDF DQAFWEALGK AVKAVRSSKE IKMVRDEAVY QLKVCSSLFG LIQDVSEGQR
LKDVTEQVYK LFKQKKLAIG GLDNDDLLHL TAKVFEEHPE IAAVYTDKFK LVMVDEFQDT
DQQQVQMIKS LSGKDAQYLT TVGDAQQSIY RFRGADVDVF FRRQAEVPED LQPRLVDNFR
SHNEILRFVA KVCSADGMIA DFMDLSAGRE EPTTPFIAHS PRVYFEVTKF VKSGSSKPGD
DISRKQLVAH QLADRINTLM QDENIQAKDV AILMSSVKEA QPYIEALRTF GIESVVSGAS
TFGEQPEVEL IGSLLQTLAN MYDSYEGLFP VLSSEIFNLD ASDLLLLGTN FGENGQKITN
RDIAESLVND AFNPPFEISL KLKNALEILS DARSSLSNNR VSDVLKKVVL DAGWISRLQN
KGNEGQSKIA NIFAALEQID SLQKELSVGI ASVAKAFSEW CGTAKESPKV LHSSTQNAVT
FMTIHASKGL EFPVVAVVGA VSGPKASAGG EPFLHVKKDN SYQIAFSSSS KKLKNLYDGC
HEVPTSIDEC KNLLKWRMFL EAQENEAEEQ EQNRCLYVAL TRAREAVILT STIDLTKEGI
SPRYTRKITD ALFEETPLSA GEHLFEYGGN LAGCMRVVEG SGKKDEPIQV EGLELVEPSD
VNPREEKYSQ AVETFDIYEK AELSVASETT YDQRKGFFSY SSAHQQMAEN FESENNQKLE
EEFKGVSQGH EADNPQPATE ASVVLPGTLA DDGVDPTSLG SAFHELAQIM VETQSKVDEQ
IIDRLCLKNS VPQRAVSRVK QALELWSNSE IRQEALAHDV VIAESPFTLQ VDSEYGNYVE
GAIDLLAYNR GSKDALVVDY KTGDKGLSAA QIYEHHQMQA NFYAYVLMQR GFTKVECAFV
CVEIEEAGQP HVARYAFDAN HQPQL
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