| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0499 |
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| Symbol | |
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| ID | 8413348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 570549 |
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| End bp | 573179 |
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| Gene Length | 2631 bp |
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| Protein Length | 876 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 645022067 |
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| Product | YhgE/Pip N-terminal domain protein |
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| Protein accession | YP_003179521 |
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| Protein GI | 257784304 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1511] Predicted membrane protein |
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| TIGRFAM ID | [TIGR03061] YhgE/Pip N-terminal domain
[TIGR03062] YhgE/Pip C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGTGG TTTGGAATAT ATTCCTACAC GACATAAAAC GTATCCTAAA AAATCCCATA
GCCGTCCTTG TAACTATTGG TGTTTGTATA ATTCCCTCGC TCTATGCGTG GTTCAATATT
GCCGCAAACT GGGACCCCTA TAAAAACACA CAAACAATGC CTATTGCTGT AGTTTCTGAA
GATGTAGGCG CTGAAGTAGG CAGCCAAGGA CACATTAATG CGGGAGACTT AGTAGTAGAC
AAGCTTAAAG ACAATAATCA GCTGCAGTGG ACTTTTGTTT CAAAGGAAGA AGCATTAGAT
GGAGTGTATT CAGGTCGTTT TTATGCAGCA GTAGTTATTC CTTCAAACTT TACGCAAAGT
CTGGCAAGCG TTATTTCTGG AAATCTTGAA CGTCCTCAGA TTGAATATTT TGTAAACGAG
AAACTCAATC CAGTTGCACC CAAAGTCACG GACTCGGGAG CAAAGACTAT TGAAACACAG
ATAAATGAGC AATTCTTATC AAAAGTTGCT GAAGTAATTT CTGAACATGT TGTTGACCTT
GCTGGAACTA TCTCTTCACA AGTAATTTCT TCTGAAACTG GACTTGCTGG CGATCTTGCT
CAGACAAGCA ATAACTTAAA CGAGATTTCT TCTAACCTTG CACAAACAAG CACCGCTCTT
GCAGATGCTC AAACAACCCT TGCACATACA CAATCAACGC TTGATATTCT CATTAAGACA
TCTGACAGTT CTCATCAAAC GCTCGATGAC ATTACAAGTC AGCTGACTCA GGCAAGAAAT
GACACTACTA CCCTTGCATC AAAACTCTCT AGTGCACTTG CCGTTGGTTC AACACAGCTC
ACCGATGCAT CAAATAAAGC AAACACTGCA GTAGGTGTCA TAACAGGACG TGTATCTACC
GCCTTAAGCA CGGCAGAAGG AAGCGTTACC TCAGCTCAGT CGCTAGTTCA ATCACATCAA
CAACTTCTCC AGGAACTTTT AGCCTTAAGA CCGCTAGTTC CTACGTTTCA ACAAAGTCAA
TTTGATTCCG TGATATCTAC CCTCACAACG CAAGTATCCA ATGAACAAGC CGCTCTTGTA
CGAGTCCAAG TTGCAGTTAG TGATCTTGAA GCAAACAACA ACTCACTCTC TTCTGTCTCT
AACTCACTGA ATAACACTAT TACTACAAGT GTCTCTGCAG CAGCTGACGC GCAAAATACT
CTTGCTACAA CAACCATCCC TGGCCTCAAT GCCGCCTATG ACTCATTCTG GGGAGCTGCA
AACACGCTCT CTAGCACTAC CGCAAGCATT AAGCCTACGC TTCTTCAAAT AAAAGCTATT
CTTTCCCAAC TGGAGAACGC TCTTGCACAA GCTCAAGACG CTTCTCAACT AACGCAGAAT
TCGCTCTCCA ATAGCGCGAA GACGTTTAGC AATCTTGCCG CAGATGCAAG TCTTATTCAG
AGCTCAGAGT TTATGAAGCT TTTGCAAAAC ACCATGACTC TGGAACCAAG CGATATTGCA
GCGTACATGG CAAAACCAGT AACTCTTACC AATCAAGTTG TCTATCCAGT TGCCAACTAT
GGATCAAGCG TTGCTCCGTT TTATACCAAT CTTGCTCTAT GGGTAGGCGG CTTTGTTCTC
ATTGCCATTT ATAAGCTTGA GGTTGCGGAC AAAGAAATAG GTATTGTTAC GCCCTGGCAA
GCATACTTTG GACGTTGGAT TCTTTTCATG ATTCTTGGCA TATCCCAAGC ACTTATTTGC
ACTATAGGAG ACTTAGCTAT GGGAATTCAA TGTGTCAGTC CTGCTGGCTT TATCTTTGCA
GGAATTATTG AATCCATCGT ATATGTCAAC ATTATTTACG CATTCTCTAT CGCTTTTAAG
CACATTGGTA AAGGCCTCTG CGTGCTTTTT GTCATTTTGC AAATTCCTGG CACTTCCGGT
CTCTACCCTA TTGAAATGAT GCCTGGATTC TTTCAAGCTA TTCATCCATG GCTTCCGTTC
ACCTATGGAA TTGCAGCCAT GCGCGAGTCT GTTGGTGGAT ACTTTGAGAC CACCTATGCA
ACGCAGCTAG CACTTCTCGC CTGCTTTATT ATTCCAGCCC TCATCATTGG AGTGGTCCTG
CGTCGACACC TGCTTAATAT CAATGCACTC TTTGACAAGA AACTCTCTGA AACTGGCTTT
ATGATTCACG AGCAGAAACC ACTCACAAAA AGACATCTTT CTCTATCCAC TATTACATCA
GCGCTTGCTC AGTCCGACAT TACGACTGTC CAAGTACAGA AAAATGGCGA GAAATTCCGT
ACAAAGTATC CCGCGCTTAA ACGTGCAGGA ATTGTATACC TATTAGCACT TCCCCTTATC
TTGACTGTTA TTATGTTTGG AGCCTCTCAA AAGCTCTCGT GGCTTATTGT CTGGGTTATT
TCAATTGTTA TTGGCCTTAC CTATCTCATT GTTATTGAAT ACATCAACGA GAGTATAAAT
TATAAAAATT CGATGTCTGA ACTTTCTAAA AACGAGATGC TTGTACTCTT GCAGGAAGAA
TATGGCTCTG AAAACGGTGC TCAAAGAAGT TTTATAAATT CTTCTATTGC AGATGACAAC
TCATCTATGA GTAGCCCCAA CACATCAGCT ACTTCAAAGC AAGGTGAGTA A
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| Protein sequence | MNVVWNIFLH DIKRILKNPI AVLVTIGVCI IPSLYAWFNI AANWDPYKNT QTMPIAVVSE
DVGAEVGSQG HINAGDLVVD KLKDNNQLQW TFVSKEEALD GVYSGRFYAA VVIPSNFTQS
LASVISGNLE RPQIEYFVNE KLNPVAPKVT DSGAKTIETQ INEQFLSKVA EVISEHVVDL
AGTISSQVIS SETGLAGDLA QTSNNLNEIS SNLAQTSTAL ADAQTTLAHT QSTLDILIKT
SDSSHQTLDD ITSQLTQARN DTTTLASKLS SALAVGSTQL TDASNKANTA VGVITGRVST
ALSTAEGSVT SAQSLVQSHQ QLLQELLALR PLVPTFQQSQ FDSVISTLTT QVSNEQAALV
RVQVAVSDLE ANNNSLSSVS NSLNNTITTS VSAAADAQNT LATTTIPGLN AAYDSFWGAA
NTLSSTTASI KPTLLQIKAI LSQLENALAQ AQDASQLTQN SLSNSAKTFS NLAADASLIQ
SSEFMKLLQN TMTLEPSDIA AYMAKPVTLT NQVVYPVANY GSSVAPFYTN LALWVGGFVL
IAIYKLEVAD KEIGIVTPWQ AYFGRWILFM ILGISQALIC TIGDLAMGIQ CVSPAGFIFA
GIIESIVYVN IIYAFSIAFK HIGKGLCVLF VILQIPGTSG LYPIEMMPGF FQAIHPWLPF
TYGIAAMRES VGGYFETTYA TQLALLACFI IPALIIGVVL RRHLLNINAL FDKKLSETGF
MIHEQKPLTK RHLSLSTITS ALAQSDITTV QVQKNGEKFR TKYPALKRAG IVYLLALPLI
LTVIMFGASQ KLSWLIVWVI SIVIGLTYLI VIEYINESIN YKNSMSELSK NEMLVLLQEE
YGSENGAQRS FINSSIADDN SSMSSPNTSA TSKQGE
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