| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0378 |
|---|
| Symbol | |
|---|
| ID | 8413227 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 437076 |
|---|
| End bp | 440108 |
|---|
| Gene Length | 3033 bp |
|---|
| Protein Length | 1010 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 645021946 |
|---|
| Product | Peptidase M16C associated domain protein |
|---|
| Protein accession | YP_003179400 |
|---|
| Protein GI | 257784183 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1026] Predicted Zn-dependent peptidases, insulinase-like |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.858415 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCTGG AAGGGACAAG ATGGTCCAAA AACGGCATTA CTGCTCACGT AAGTTTTCGT
ATAGATTGGC AGCTTATGAC ATCCAAATAT TTACAGATGG ACAGCGCGTT TTCTGTTGGC
ACGCTTCATG CAGAAGACAA AAGCTTTGAG ATAATCTCGG CTGAGTGGGT TAACGAGATT
TCTGGCTATG CATACATTTT CAAGCACGTT CCCACGGGCG GACGCCTTAT GTGGTTTGCC
TGTGACGACG ACAATCGCTC ATTTGCTATT GCGTTTAAGA CACCTCCTGT AGATCACACG
GGCGTCTTCC ACATCCTGGA GCACTCGGTT CTCTGCGGAT CCGATGCCTA TCCTGTTAAG
GAGCCTTTTG TTAACCTGCT CAAAACCTCT ATGCAGACAT TCTTGAACGC GATGACCTAC
CCTGACAAAA CGGTTTACCC TGTGGCTAGC ACTAACGTAG CTGACCTGGA AAACCTTATG
AGTGTGTACC TAGACGCCGT CTTGCACCCT GCAATCTATA AACGCAAGCG CATCTTTGAA
CAGGAAGGCT GGCACCTAGA GGCTGATGAC CAGGGAAATC TGAGTTATAA CGGTGTTGTC
TTTAACGAGA TGAAAGGCGC ACTCTCTAAT CCTGATCGCG TGCTCTATGA TTCTGTCAGC
GAAGCTCTCT TCCCTGACAC TGCCTACGGT AAAGAGTCCG GCGGCAAGCC TCGCGCAATC
CCTAAGCTCA CCTACGAGAA CTTCCTGGAC GCCCACGCTC GCCACTATGA CCTCTCTAAC
AGCTACACCT TCCTCTATGG CGATCTTGAT TGCGAGCGTG AGCTCTCTTT TATTGCCCAG
AGGTTTGCAG CTGCCGAGAA ACGCGATGCA GGTGCTCCAA ATCCGCTTAA CCTACAGACA
CCCGTGCTGC CCAAGCCTTG CCAGATCCAC ATGAACACCA CAGCCGACAA CTCCAGCGTT
GGCCTAGGCT ACGTACTTGG AACACCAGAC CAGCGCAACA AAATGATGGC AGCAGATATC
CTGTTTGATA CCCTCATGGG CTCCAATGAA TCTCCGCTCA AACGCGCAAT TCTTGACGCA
GAGCTAGGTG ATGATTTTAG CTACTACCTT TCCGATGATC TTGCACAACC TATGCTCTTC
TTGCAGCTCA AAGGTCTTAA AAAGGGTGCA GCTCAAAAGT TCCGTGAGCT TGTAGAATCA
ACCTGCCAAA AAATTGCTAC CGAAGGCATT AATCAAAAGA AGCTCAGCGC TTCCATTGCA
CTTGCAGAGT TTAACCTGCG CGAAAATGAT CAGCCTTACT CAAACGGTAT TGAATACACG
CTGCGTTCGC TTTCAAGCTG GCTCTACGAC GATGCGCGCC CTCTAGACTA CATCCGCTAC
GAGGACGCCA TTGCTTACGT CAAAGAACTT GCAGCTCAAA GGGGCTTTGA GAAGCTGCTG
CTAGAGCTTA TCTGCAATAG CAAACATGCA GCTCAGGTCG AGCTTGTTCC CACAGACGAG
GGAGATGCCC AAGAAGAAGC CACCGAGCTG GAACAGCTTC GCTCCACACT TACCGATAAA
GACGTCGAGA AGATTCGTGC AGAAGTTGAG GCGCTCCGTC TGGAGCAAGA AACACCTGAC
GCTCCAGAAG ATCTTGCCAA GCTTCCGTCC CTCTCGCTCA GTGATATTGG TGCAGGTAGA
GAGCGCCCTG CTGGCTTTGA AGTTAAGGCT CCCCTGCCTT GCGTTGCACA CGAGCTGGAC
ACTCACGGCA TTGACTACGT CTACCATTAT TTTGATTTGA CTCACGCGGT TACCTTTGAG
GAACTGCCGC TTGTTGGTGT TCTTGCTGAG GTACTGGGCA AGCTTGATAC AGCTGCTCAC
ACTGCATCTG AGCTGGATAT TCTTATTGAG AGCAACCTTG GTCATCTCTC GTTCTTCACA
GATATCTACG ATCAAGACAC ACTTGACCAG GCATACCCTG CTTTTATTGT TGCAGCTAGT
GCACTCACCG AGAAAACCGA AGAACTTGCA AGCATTCCTT CTGAGGTCTG GTCCAGCACG
CGTTTTGATG ACCTAAACCG TCTAAAAAAC ATCCTGACTC AGCGTCGTAT TGCGCAAGAG
CAGTACTTTG TAGGTGCTGG TCATACAGCT GCGCAAAATA AGGCTTTGAC CTCGTATTCT
GCCGCTAGTC GCGTAAATGA TGCGCTGGCG GGTGTTGGCT TCTACGAGTA CCTAAAAAAC
CTGCTTTCCA ACTGGAATCA GCGTGCTCCT CAGCTTGCAA AAGACTTAGA TGCACTAACC
CACAAAATTT TCCGCGTAGA TAACGTTACC GTCAGCTTTA CTGGCTCCAT GCAAAGTCGA
GACGCATTCT GGAAAGTGGC AGGAGATCTC AACCTCAAGA AAAGTAATGA ATCGCAAGCC
GACAGCGCAA GGTCAACGCT TGTTGTCCCT GAGGGCAAAC TACAGCGCGT GGCATATATC
ATTCCATCAA ATGTCTCTTA TGTTGGTCTC TCCTATCCAA ACGTTGCCCA TGCAACCAAT
GAACAGCAGG GTGACTGGCT TATTGCTACC AAAGTTTTGG GCCTTGACTA CCTGTGGAAC
GAGGTCCGCG TCAAGGGCGG CGCTTATGGC GTCATGTTCA GAAACTCCAT CGCTGGCTTG
CAGAGCTTTG TCTCCTATCG AGATCCCTCG CTTGATGCAA CCCTTGACCG CTATGTTGGT
GCGGGTAGTT GGCTCTCTAA ATGGACTCCA GACCAGGACG AGTTTGAGGG CTACGTAGTT
GCCTCTGTTG CTGGCGTTGA CGCTCCTGTT CCCGCTCGTA TGCTTGCTCG CAGACAGGAC
ATTGAATACT TCAACCATCG TGATCCAGAG CGTCTTCTTA AACTTCGCGA GAAGATCCTT
CACGCCCAGG TTGAAGACAT CAAAGAGCTA GGAAACACTA TACCTCAAAG CCATGATGAC
CTCTCGGTTG TTGTCTTTGG TGCAAAAGAC GCCATTGAAG CTTCCAAGCT TGATCTTAAG
GTTGTTGACC TCTTTGGCGA TCAGGTGAAT TAA
|
|---|
| Protein sequence | MALEGTRWSK NGITAHVSFR IDWQLMTSKY LQMDSAFSVG TLHAEDKSFE IISAEWVNEI
SGYAYIFKHV PTGGRLMWFA CDDDNRSFAI AFKTPPVDHT GVFHILEHSV LCGSDAYPVK
EPFVNLLKTS MQTFLNAMTY PDKTVYPVAS TNVADLENLM SVYLDAVLHP AIYKRKRIFE
QEGWHLEADD QGNLSYNGVV FNEMKGALSN PDRVLYDSVS EALFPDTAYG KESGGKPRAI
PKLTYENFLD AHARHYDLSN SYTFLYGDLD CERELSFIAQ RFAAAEKRDA GAPNPLNLQT
PVLPKPCQIH MNTTADNSSV GLGYVLGTPD QRNKMMAADI LFDTLMGSNE SPLKRAILDA
ELGDDFSYYL SDDLAQPMLF LQLKGLKKGA AQKFRELVES TCQKIATEGI NQKKLSASIA
LAEFNLREND QPYSNGIEYT LRSLSSWLYD DARPLDYIRY EDAIAYVKEL AAQRGFEKLL
LELICNSKHA AQVELVPTDE GDAQEEATEL EQLRSTLTDK DVEKIRAEVE ALRLEQETPD
APEDLAKLPS LSLSDIGAGR ERPAGFEVKA PLPCVAHELD THGIDYVYHY FDLTHAVTFE
ELPLVGVLAE VLGKLDTAAH TASELDILIE SNLGHLSFFT DIYDQDTLDQ AYPAFIVAAS
ALTEKTEELA SIPSEVWSST RFDDLNRLKN ILTQRRIAQE QYFVGAGHTA AQNKALTSYS
AASRVNDALA GVGFYEYLKN LLSNWNQRAP QLAKDLDALT HKIFRVDNVT VSFTGSMQSR
DAFWKVAGDL NLKKSNESQA DSARSTLVVP EGKLQRVAYI IPSNVSYVGL SYPNVAHATN
EQQGDWLIAT KVLGLDYLWN EVRVKGGAYG VMFRNSIAGL QSFVSYRDPS LDATLDRYVG
AGSWLSKWTP DQDEFEGYVV ASVAGVDAPV PARMLARRQD IEYFNHRDPE RLLKLREKIL
HAQVEDIKEL GNTIPQSHDD LSVVVFGAKD AIEASKLDLK VVDLFGDQVN
|
|---|
| |