Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0285 |
Symbol | |
ID | 8413133 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 325982 |
End bp | 326791 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 645021852 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_003179307 |
Protein GI | 257784090 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000546061 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGCTA ATCTGCAAGA ACTAAAAAAG ACCTATTCGC GGCAGACGTA TAGTGTGTTT TCAATAAACC GTCAGCAGAA GATTGCTGAC TCCCAAGTTA CTTTTTCGCT TGCCCATTCT GTTTTCATCA TTCCTATTTT TGGAGCAGCT GAAATTACTA TTGGCGGCGA AGAGTTTATC TGCGAAGGAA CCACCGTTGT ACACGCTCCC GCAGGTCAGA CCGTTTCTTA TCGCACACTT TACGGGCGTT CTTTTGACCA CGTAAATATC TATTATGACG GCGTGCAGGA CGATGTCACT AGTCCAATCT TCAATGCATA TGCATTCGAT CCTCAAGGGT TTGATCGCAT TCTTAATAAG ACACTTGACC TAGAAAAACT TAATACCACC CCATCACTGG ACAATCGTGT TGCGCAGATT GTCAATGGCA CCGAGCTTAT CAAATCAATG TTTCTGCTTA CCAACAGCCA AAAAGTCCAG GAGAGTATGG CCGACGCTCG CACATATATC GAACTCCACT TTGCAAATCC AATTACCATT CCCGACTTAG CCAAACGCTG CGGAATGAGT ACTCAGCGCT TCTCTAACAA TTTTGTCCAA ACATTTGGCG TTCGCCCAAT GACGTTCATC ATTGCAAAGC GTCTTGATCA TGCTAAACAG CTACTTCAGT CTGGTCTTTC TGTACGAGAG ACTTCCGAGG CAGTTGGTTA CAACGATCCG TTCTACTTCA GCAGACTGTA CAAGAAACAC ATGGGCGTTA CACCTCAGGA TGTTCATGAC CGCTATGAAG GAAATATTCT GATTAAGTAG
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Protein sequence | MQANLQELKK TYSRQTYSVF SINRQQKIAD SQVTFSLAHS VFIIPIFGAA EITIGGEEFI CEGTTVVHAP AGQTVSYRTL YGRSFDHVNI YYDGVQDDVT SPIFNAYAFD PQGFDRILNK TLDLEKLNTT PSLDNRVAQI VNGTELIKSM FLLTNSQKVQ ESMADARTYI ELHFANPITI PDLAKRCGMS TQRFSNNFVQ TFGVRPMTFI IAKRLDHAKQ LLQSGLSVRE TSEAVGYNDP FYFSRLYKKH MGVTPQDVHD RYEGNILIK
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