| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0154 |
|---|
| Symbol | |
|---|
| ID | 8413000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 178475 |
|---|
| End bp | 178948 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 645021724 |
|---|
| Product | putative PTS IIA-like nitrogen-regulatory protein PtsN |
|---|
| Protein accession | YP_003179181 |
|---|
| Protein GI | 257783964 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.882818 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACAA CCGACGCTGA GCTCCTAAAG CCCGAGCTCG TTTTCTTTGA CATTGAGGCC
AAGGACGCCT TTGAGCTGTT TAATCAGCTG GAGACTCGCT TGAGCAATCT GGGCTATATC
AAAGATACCT GGAAAGAGGC AATTTCAACT CGCGAGAAGA ACTATCCAAC TGGACTTGCT
TTTCCTGCAG GTGAGATTGC AATTCCACAT ACCGATCCTG TCAACCTTGA GAAGCCTTAC
ATCGCAATCG TAAAGCCATC CAGCCCAATT AACTTTGAGC CAATGGGTGG TGACGGTGAC
ACTGTTCCAG CCAAACTTGT CATTAACCTG GGTATTATGC GTGATGGCGG TCAGGTAGAG
ATGCTTCAGA GCTTGATGGG TATCTTCATG GATGAGGCAA AGTCTGCCGA TGTTTTTGGT
CAGACCACCG CAGAAGGCAT GGTCGCCGCG TTTTCCAAGT ATCTCTCCGA GTAG
|
|---|
| Protein sequence | MATTDAELLK PELVFFDIEA KDAFELFNQL ETRLSNLGYI KDTWKEAIST REKNYPTGLA
FPAGEIAIPH TDPVNLEKPY IAIVKPSSPI NFEPMGGDGD TVPAKLVINL GIMRDGGQVE
MLQSLMGIFM DEAKSADVFG QTTAEGMVAA FSKYLSE
|
|---|
| |