| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0802 |
|---|
| Symbol | |
|---|
| ID | 6274375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 941690 |
|---|
| End bp | 942010 |
|---|
| Gene Length | 321 bp |
|---|
| Protein Length | 106 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642612852 |
|---|
| Product | transcriptional regulator, HxlR family |
|---|
| Protein accession | YP_001877416 |
|---|
| Protein GI | 187735304 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1733] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0464121 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 0.73342 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTACT ATAATTCATC ATGCCCTGTT GAAACTACTC TCCAACTGAT TTCCTCCCGC
TGGAAAGTGC TCATCCTCCG CGATCTGCTC GAAGGCACCC GGCGGTTTGG AGAACTCCGC
AAATCCATTG GGCCTGTGAC GCAGAAAGTT CTGACCGCGA ACCTGCGTTC TATGGAAAAG
GACGGCCTGC TTACGCGAAA GGTGTATGCG GAAGTACCTC CGCGCGTGGA ATATACTCTT
ACGGAACTGG GGCGCAGTCT GCGCCCCGTC CTGGCCTCCA TGGCGGAATG GGGATCGAAA
TACCAAAGAG AAAACCGCTG A
|
|---|
| Protein sequence | MTYYNSSCPV ETTLQLISSR WKVLILRDLL EGTRRFGELR KSIGPVTQKV LTANLRSMEK
DGLLTRKVYA EVPPRVEYTL TELGRSLRPV LASMAEWGSK YQRENR
|
|---|
| |