| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5920 |
|---|
| Symbol | |
|---|
| ID | 8330127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 6964191 |
|---|
| End bp | 6965090 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644946351 |
|---|
| Product | signal peptidase I |
|---|
| Protein accession | YP_003103574 |
|---|
| Protein GI | 256379914 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0681] Signal peptidase I |
|---|
| TIGRFAM ID | [TIGR02227] signal peptidase I, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0083042 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTCTACG TCGGACGTCA CCGGCGGCCC TCCGGAGAGG ATCCCGAGGA ACCGGTCGAC
GAGGAGGCCG TCCAGCGGTG GCGTGCGCGC GCCCGCAAGG GGCGCAAGGG CGCCTTCTGG
AAGGAGCTGC CCGTCCTCGT CCTCGTGGCG GTCGGGCTGG CGTTCCTGAT CCAGTCGTTC
CTCGCCAGGG TCTACATGAT CCCGTCCGAG TCGATGGAGC AGACCCTCCA CGGGTGCGCG
GGCTGCTACG GCGACCGCGT GCTCGTGGAC AAGCTGACGT ACCGGTTCAC CGACGTCTCG
CCCGGTGACG TGATCGTCTT CCACGGTCCG GACTCCTGGG TCAACCAGGA GTTCCACCCG
CCGCAGGACA CCAGCGGCCT CGCCGGGGTG ATGGCCTCGC TCGGCCAGCT GATCGGGCTG
CCCTCGCCGA ACGAGGAGGA CTTCGTCAAG CGGGTCGTCG CCGTCGGCGG GCAGAGCGTG
GAGTGCTGCG ACGAGCAGAA CCGGGTCAAG GTGGACGGCA GGCCGCTCGA CGAGCCGTAC
ATCTACTGGG AGCCGGGGCG CAGCACCGTC CAGGAGTCGT TCCCGAAGCT CGACGTGCCA
CCCGGCTACC TGTTCGTGCT CGGCGACAAC CGGAACGACT CGTGCGACTC GCGGTGCCAG
GGCGACGGGC GCGAGGGCGG GCTGGTGCCG GTGACCGAGG TGGTCGGCAA GGCGCGGCTG
GTGGTGCTGC CGCCGTCGCG GTGGAAGGCC GTCGACGACC ACGACCCGCA GGCCGCCGCG
ATCGGCGCGC CCGCCTGGCA GGACGCCGCG CCGCTCGGCG TCGGGGCCGC CGCCGCGTGG
CCGGTGCTGC TGCTGGGCAG GCGCGTGCGC GGGAGGTTCC GGCGGGGTGG GCTGGGATAG
|
|---|
| Protein sequence | MFYVGRHRRP SGEDPEEPVD EEAVQRWRAR ARKGRKGAFW KELPVLVLVA VGLAFLIQSF
LARVYMIPSE SMEQTLHGCA GCYGDRVLVD KLTYRFTDVS PGDVIVFHGP DSWVNQEFHP
PQDTSGLAGV MASLGQLIGL PSPNEEDFVK RVVAVGGQSV ECCDEQNRVK VDGRPLDEPY
IYWEPGRSTV QESFPKLDVP PGYLFVLGDN RNDSCDSRCQ GDGREGGLVP VTEVVGKARL
VVLPPSRWKA VDDHDPQAAA IGAPAWQDAA PLGVGAAAAW PVLLLGRRVR GRFRRGGLG
|
|---|
| |