Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_5914 |
Symbol | |
ID | 8330121 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 6958093 |
End bp | 6959070 |
Gene Length | 978 bp |
Protein Length | 325 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644946346 |
Product | integrase family protein |
Protein accession | YP_003103569 |
Protein GI | 256379909 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000658468 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCCCCGC CTCCGCACCG CCGTCCGCGC CGCGTCGACC TCGTCCGGCT CCGCCGCGAA CTGCCGTCCG ACGTCGCCAC CGCGCTCGAC GCCTACGAGC GCCACCTGTC GCTGGAGCGC GGCCTGTCCC CGCACACCGT CCGCGCCTAC CTCGGCGACG CGGTCGCGCT GCTCGTCCAC CTCGCCGCCG GGACGCCGGG GGACGCGACG GTCGAGTCGG TGGACCTGCT CGGCCTGCGC TCGTGGCTCG CCGCGCAGCA CGCCGAGGGG GCGAGCCGGA CGACCATGGC GAGGCGCGCC GCGTCGGCCA GGGCGCTCAC CGCGTGGGCC GCCCGCACGG GCCTGCTGGC GGAGGACCCC GGTCCCCGGC TGAACGCCCC GCGCCCCCAC CGGACCCTGC CGGTGGTGGT CCGCCCGGAC CAGGCAGGGG CGGCGCTGGA GGCCGCCGCG GCGGGCGCGG ACCAGCACGA TCCGGTTGCG CTCCGTGACC GGGCCGTGGT GGAGTTGCTG TACGCGTCGG GGGTCCGGGT AGCGGAGTTG TGCGGGCTCG ACCTCGACGA CGTGGACTAC TCCCAAAGGG TGATTCGAGT TCTGGGCAAA GGCAGTCGCG AACGCACTGT TCCCTTCGGC GTCCCGGCCG AACGGGCAGT TCGTCAATGG GCGGACCTGG GAAGATCCGC CCTGGTCACG GAGCGTTCGC ATCGAGCCCT GTTCCTCGGC GCCCGAGGCG GGAGGCTCGA CCCGCGTACC GCCAGGAGGG TCGTCCACGA TGTCATGGGT GCGGTCCCCG GCTCGGCTGA CGTCGGCCCG CACGGCCTGC GCCACTCCGC GGCCACGCAC CTGCTGGAAG GGGGAGCCGA TCTGCGCACC GTCCAAGAGC TCCTTGGTCA CGCTACGCTC GCAACGACTC AGCTCTACAC ACACGTCACC GTCGAACGGC TGAAGGCAAT CCATGATCGA ACCCACCCCC GCTCCTGA
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Protein sequence | MSPPPHRRPR RVDLVRLRRE LPSDVATALD AYERHLSLER GLSPHTVRAY LGDAVALLVH LAAGTPGDAT VESVDLLGLR SWLAAQHAEG ASRTTMARRA ASARALTAWA ARTGLLAEDP GPRLNAPRPH RTLPVVVRPD QAGAALEAAA AGADQHDPVA LRDRAVVELL YASGVRVAEL CGLDLDDVDY SQRVIRVLGK GSRERTVPFG VPAERAVRQW ADLGRSALVT ERSHRALFLG ARGGRLDPRT ARRVVHDVMG AVPGSADVGP HGLRHSAATH LLEGGADLRT VQELLGHATL ATTQLYTHVT VERLKAIHDR THPRS
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