Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_5913 |
Symbol | |
ID | 8330120 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 6956439 |
End bp | 6957257 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644946345 |
Product | RNA polymerase, sigma 28 subunit, FliA/WhiG |
Protein accession | YP_003103568 |
Protein GI | 256379908 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00269846 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGGGCGGC CTGCTCATGC CGCTGCCGAG TCCCGGACCG CTGATGACGT CGAAGCCGGG ATCATCGCGC TGTGGCACAC CTACGGGCAG TCGCGCGAGC AGGGGCTGCG GGATCGGTTG GTGCTGCACT ACGCGCCGCT GGTCAAGTAC GTCGCCGGGC GGGTCGGGAC CGGGTTGCCC GCGCACGTCG ACGTCGCCGA CCTGATCCAG TCCGGGATCT TCGGGCTGGT CGACGCCATA GAGAAGTTCG AGCCCGAGCG CGGCCTGAAG TTCGAGACCT ACGCCATGCA GCGCATCCGT GGCGCGATCC TGGACGACCT CAGATCGCAG GACTGGGTTC CCCGTTCCGT TCGCAGCAGG GCTCGGGACG TCGAGCGGGC GCTCGAGCGG CTCGGTGGGC GGTTGCAGCG GACGCCCACC GACCGGGAGC TGGCCGCTGA GCTGAAGATC GGGCTCGGGG AGCTGCGGGA GCTGTACGCG CAGTTCCAGC TCACCAGCGT CGTCGCGCTG GACGAGCTGA TCGCCGCAGG CCGGGCCGCC GGGAGCGCGG GGTCCTCGCT GGCGGAGTCG TTGCCCGACG AAGGCGCCGA GGACCCGGTC GCCTCGCTGG TCGACCAGGA CAGCCGTCGG CAGCTCGCCG ACGCCATCGC GCAGCTGGCC GAGCGGGACC GGGTCGTGGT CACGCTGTAC TACTTCGAGA ACCTGACGCT GGCCGAGATC GGCAAGGTCC TCGGGGTCAC CGAGTCCCGT GTCTGCCAAC TGCACACCAG AGCCGTCCTC CGGCTCCGCA CCAAGATCAA CGAGCAGCTC GAAACCTGA
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Protein sequence | MGRPAHAAAE SRTADDVEAG IIALWHTYGQ SREQGLRDRL VLHYAPLVKY VAGRVGTGLP AHVDVADLIQ SGIFGLVDAI EKFEPERGLK FETYAMQRIR GAILDDLRSQ DWVPRSVRSR ARDVERALER LGGRLQRTPT DRELAAELKI GLGELRELYA QFQLTSVVAL DELIAAGRAA GSAGSSLAES LPDEGAEDPV ASLVDQDSRR QLADAIAQLA ERDRVVVTLY YFENLTLAEI GKVLGVTESR VCQLHTRAVL RLRTKINEQL ET
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