| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5378 |
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| Symbol | |
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| ID | 8329580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 6390443 |
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| End bp | 6393643 |
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| Gene Length | 3201 bp |
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| Protein Length | 1066 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 644945815 |
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| Product | WD40 domain protein beta Propeller |
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| Protein accession | YP_003103043 |
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| Protein GI | 256379383 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR01451] conserved repeat domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0193905 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGACCGAC CGGTGATCGG ACGAGTGGGC AGACCCGCCG CCTCCCTGGC GCTGGCGGTG
CTGCTGGGCG GCTTCCTGCT CGCCGACCGG GCGCCGCAGG CCACCGCGCA GGACCACCCC
CTCTCCCCCT ACCTGGTGGG GTACGAGGGC GGGGACGACG TGCACAGCGC CAACGCGCGG
GGCGAGGACC AGCGCGCCCT CAGCGGCCCG GACCGCGGGG AGGCGCAGCC CGCGTACTCC
CCGGACGGCA CGCGGATCGC CTACGTCCAG TGGGGCGTCG AGGCTCCCCC GAGCTCGGCG
ACCCCGTCCT CGGCGACCCC GTCCCCCGCG CCGGGCCCGC CGGTCACCGG CTTCGCCGGC
CTGGTCGTGG CCAACGCGGA CGGCACCTCC CCGAGGGTGC TCAACCCTGG GATCGGCGGG
GCCGAGCCGA CCTGGTCCCC GGACGGCACG AAGCTCGCCG TCACCACCGA GGCGGGCATC
CGCGTCCTGC GCGTCGCGGA CGGCGCGGTG CTCGCCGACG TCCCCGCGCC GCCGACCCTG
TCCGCCCGCG ACAGCGAGCC CGCCTGGTCC CCGGACGGCA CGACCATCGC GTTCACCAGG
CGGATCGACG GCCAGGAGAC CCCGAGCACC GGTCCGTACG CGGTGGTGGG CGGCACGAGC
CCCGGCGGCG ACTACCGGAC CGGGGTGAGC CTGACGACCG ACGAGGTCCC GAACAACCCG
GACATCGTGT TCCTGCTGGA CAACACCGGC TCGATGGGCG GCTACATCCA GGACGCCAAG
GCCAAGCTGA CCGGCGTCCT CGCCCGGATC TCCCAGCTCC AGCCGCAGGC GCGCTACGGC
CTGGCCACCT ACCGCGACAT CGACGAGCCC GAGCACTACG AGCTGCGGCA GCGCCCCACC
GCCGACCTCT CCGCCTTCCA GACCCAGCTG AACTCGGTCA CCGCGGGCGG CGGCGGCGAC
GGTCCCGAGG ACTGGTTCAA CGGCCTGCGC CAGCTGGCCA CCGATCCCAC CGTCTTCACC
CGCGACGGCA GCCGCATCGT GGTGCTCCTC GGCGACGCGC CGCCGCACTT CGACTGCGAC
AACCCCGCAG CGGCCTACTG CCCCCGGTAC CCCACCCGCG ACCAGGTCGT CTCCGCGCTG
ACCGGCGCCG GCGCGCAGGT GCTCGCGATC CCGCTCGGCA CCCCGTCCTC GCTCGACGCG
GGCGGCCACG CCACCGACAT CGCCAACGCC ACCGACGGCC TCCTGATCGA CGGGAGCATC
CCGCCCGACG CGACCGCCGA CGCCATCGCC GCGGGCATCC GGGACCTGCC GGTCACCGTC
ACCCCGCAGC ACTCCTGCGA CCACGGCGCG ACCGTCGGGT TCGACCCGCC CGGCCTCACC
CAGCGCGGCG GCGGGCAGGT GTCCTTCGCC GAGACCGTCA AGCTCCCCGC CGACATCCGC
CCCGGCACGA CCGCCACCTG CCAGGTCGAC TTCCTGTTCA ACGGCCAGCT CCCCGAACCC
CGCCGCACCC AGCACCTCAC CGCCACCGCC CAGACCCCCG GCGCCCCCAC GGTCGTCGTC
AGCGGCGCGG TCGTGACCAG CCCCGACGGC CAGCCCGCCC CCGCGACCTT CACCGCCACC
GCCACCGACG CGACCGGCGC CCCGCTCACC CCCGGCTGCG ACCAGACCCC CGGCGCCCGC
TACCCGGTCG GCTTCACCAC CGTCACCTGC ACCGCCACCG ACGCCTCGGG CCGCACCGGC
TCCGCCACCG CCCCGCTGGC CGTCCAGGGC CCCGGCACCG GTCAGGGCAC CGGCATCTGG
TTCAGCGCCG TCGACCAGGA CACCCTCCGC TCCACCCGCC AGATCCCCTT CACCGCCAAG
GTGAACGAGC CCTGCGCGAA CGACGGCACG GCCCCCGCCT GGTCCCCGGA CGGCCAGCGC
CTCGCCTACG CCCACCGCGC CGAGCACCTG TGCACCGCCA ACGCGGACGG CACCTCCGCC
ACCAGGATCG TCAGCGCCAC CGGCCCGAAC CACCCCGAGT GGACCCCCGA CGCCGCCGCG
ATCCTGTTCG ACGGCGACGA CGACGGCCGC CGCGCGATCT GGTCCGTCCC CCCGAACGGC
GGCGACCCGG TCACGCTGGT CAGCCGCGCC GACGGCGCCG CCCACCCCAC CACCCGCCGC
CTGCCCGACC TGGCCGTCAC CGCGAGCGCG TCCCCGCCGG ACGTCGTGTT CGGCGGCGGC
GCCGAGTACC TGTTCACGAT CACCAGCACC GGCCTCGTCA CCGCCCCCGG CGCCCCGATC
ACCCTGGACC TGCCGCCCGG CCTCGAGGTC GACGAGGTCC TCACCACCAG CGGCAGCTGC
CGACCCGACG CCACCCGCTG CACCCTCGGC GGCCTCGCCA GGGGCCAGCG GGCCGAGATC
CGCGTCCAGG CCACCGCCAC CACCGCCGGT GAGCAGACCG CCACCGCCAC CGCCCCGGTC
GACATCAACC CCGGCGACAA CACCGCCCGC GCGAAGGTCA CCGTCGCCGA GGAGGTCGTC
CCGCCAGCCA ACCCCGGCTC CCTGTCGCTG GCCGTCGCCG CCGTTCCCCC GGACAGCTAC
GTCGGCGGCC AGGACGTCGT GCTCTCCTAC CGGATGCGCA ACGGCTCCCC GGAGCCGATG
ACCGACGTCC GCCTCGTCAC CGCCCTGCCG CCCGAGCTCG GCGCCCCCAC CTCCGCGGGC
CCCGGCTGCA CCGCGGACGG CGAGGAGTGC GCCCTCGGCA CCCTCCATCC CGGCCAGCTC
GCCGAGGTCC GCCTCACCCT GCCCGCCAGG GCGGCCACCA GGGGCCCCGC CGGCGGCTCG
GTGTTCACCA CCGGCCCGGA CTCCGACGTC GTCGACAACA CCGCCGCCGT CGAGGTGTCC
GTGCGCCAAC CCCGGCTCAC CGTCGACCCG CCCATCGGCC CGCCCGGCTT CGTCGCCCGC
GTCGTCGGCG TCGACTTCCC GCCGGGCGCC GAGGTCCGGC TCGCCTGGAG CGCGGGCGTC
ACCCAGGAAC CCGCCACCGC CCGCGTGGGC GGCGACGGCG GCGTCGACGC CCAGCTCCTG
GTGTTCCCGC GCGACCGCCT CGGCCCCAGG GACGTGCTCG CCGCGCCGCT GACCGGACCC
CGGTTCGGCC AGGTCGCCTC GAACCCGTTC CTGGTGGTGC CCAGGACCGT GCAGCCACCG
GACTTCGTGT TCCGGGGCTG A
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| Protein sequence | MDRPVIGRVG RPAASLALAV LLGGFLLADR APQATAQDHP LSPYLVGYEG GDDVHSANAR
GEDQRALSGP DRGEAQPAYS PDGTRIAYVQ WGVEAPPSSA TPSSATPSPA PGPPVTGFAG
LVVANADGTS PRVLNPGIGG AEPTWSPDGT KLAVTTEAGI RVLRVADGAV LADVPAPPTL
SARDSEPAWS PDGTTIAFTR RIDGQETPST GPYAVVGGTS PGGDYRTGVS LTTDEVPNNP
DIVFLLDNTG SMGGYIQDAK AKLTGVLARI SQLQPQARYG LATYRDIDEP EHYELRQRPT
ADLSAFQTQL NSVTAGGGGD GPEDWFNGLR QLATDPTVFT RDGSRIVVLL GDAPPHFDCD
NPAAAYCPRY PTRDQVVSAL TGAGAQVLAI PLGTPSSLDA GGHATDIANA TDGLLIDGSI
PPDATADAIA AGIRDLPVTV TPQHSCDHGA TVGFDPPGLT QRGGGQVSFA ETVKLPADIR
PGTTATCQVD FLFNGQLPEP RRTQHLTATA QTPGAPTVVV SGAVVTSPDG QPAPATFTAT
ATDATGAPLT PGCDQTPGAR YPVGFTTVTC TATDASGRTG SATAPLAVQG PGTGQGTGIW
FSAVDQDTLR STRQIPFTAK VNEPCANDGT APAWSPDGQR LAYAHRAEHL CTANADGTSA
TRIVSATGPN HPEWTPDAAA ILFDGDDDGR RAIWSVPPNG GDPVTLVSRA DGAAHPTTRR
LPDLAVTASA SPPDVVFGGG AEYLFTITST GLVTAPGAPI TLDLPPGLEV DEVLTTSGSC
RPDATRCTLG GLARGQRAEI RVQATATTAG EQTATATAPV DINPGDNTAR AKVTVAEEVV
PPANPGSLSL AVAAVPPDSY VGGQDVVLSY RMRNGSPEPM TDVRLVTALP PELGAPTSAG
PGCTADGEEC ALGTLHPGQL AEVRLTLPAR AATRGPAGGS VFTTGPDSDV VDNTAAVEVS
VRQPRLTVDP PIGPPGFVAR VVGVDFPPGA EVRLAWSAGV TQEPATARVG GDGGVDAQLL
VFPRDRLGPR DVLAAPLTGP RFGQVASNPF LVVPRTVQPP DFVFRG
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