Gene Amir_5340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_5340 
Symbol 
ID8329542 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp6352115 
End bp6352744 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content76% 
IMG OID644945778 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003103006 
Protein GI256379346 
COG category[R] General function prediction only 
COG ID[COG4221] Short-chain alcohol dehydrogenase of unknown specificity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGAGC GCGACGGCTA CCGGGTCGTG CTCGCCGCGC GCGACGTCGA CGCCCTGCGC 
CACCGGGAGG GCGAGGACGT CCGCGTCCGC GCCTGCGACG TCCGCTCCTG GGAGCAGGTC 
TCCGGCCTGT TCGAGTGGGT CCTGGCGGAG TGGGGGCGGG TCGACGTGGT GCTCGCCAAC 
GCCGGGGTCA GCGTCGACAC CTCCTTCACC ACCGACGACG GCGACCCGCC GGACACCTGG 
ACCGACATGG TCGTCACCAA CGTGTGCGGC CCCGCGTTCA CCGCCCGCGC CGCCATGCCC 
GCCCTGATCG CCTCGCGCGG GCACCTGCTG CTCACCGGCT CCGCGTCCGG GCGCGGCGTG 
CGACCGGGGA ACCTCTACTC GGCCACCAAG TGGGCCGTCA CCGGGCTGGC CCAAGGCCTC 
CGGGCCGAGT GCGTGGGCAC CGGCGTGCGG GTCACCGTCG TGCAGCCGGG GCTGACCGAC 
ACCGGGTGCG TGCCCGCCTC GCGCGCGGGC GACCCGAAGC TCGCGCCCGA GGACGTCGGG 
CGGGCCGTGA TGTACGCGGT CTCGCAGCCG CCGGGCGTGG ACGTCAACGA GATCCTGGTG 
CGGCCCGTCG GTCAGGCCGC GCACCGCTAG
 
Protein sequence
MAERDGYRVV LAARDVDALR HREGEDVRVR ACDVRSWEQV SGLFEWVLAE WGRVDVVLAN 
AGVSVDTSFT TDDGDPPDTW TDMVVTNVCG PAFTARAAMP ALIASRGHLL LTGSASGRGV 
RPGNLYSATK WAVTGLAQGL RAECVGTGVR VTVVQPGLTD TGCVPASRAG DPKLAPEDVG 
RAVMYAVSQP PGVDVNEILV RPVGQAAHR