Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_4663 |
Symbol | |
ID | 8328861 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 5552303 |
End bp | 5553307 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644945109 |
Product | Pectinesterase |
Protein accession | YP_003102341 |
Protein GI | 256378681 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4677] Pectin methylesterase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0682309 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCACCGC ACGGCACCCG CACGACCCGA GGCGCGGCGG CGCTCTCGGC CCCGCTGCTG GCGCTCGCGC TGGCCACCCC GGCGCAGGCC GCCACCACGG TCACCGTCGC CGCCGACGGT TCCGGCGACT ACACCACCGT CCAGGCCGCC ATCGCCGCGG TCTCCTCCGG CTCCACCATC AAGATCAAGC CCGGCACCTA CAGGGGCCAG GTCTCCATCC CCGCAGGCAA GCCGGGGCTG GTCCTGCAGG GCACGTCCGG CAACTCGGCC GACGTCGTGA TCACCGGGAG CACCCCGGCG TCCACGGCGG GCACCGAGGG CAGCGCCACC GTCCTCAACA AGGCCAAGGA CACCTCGGTC ACCGGCCTGA CCATGGCCAA CACCTACGCC GCGCACGACA GCCAGGCGCT GGCCCTGTAC GCGGGCGGCG ACCGGCAAGT GTACCGCAAC GTGCGGATGC TCGGCTACCA GGACACGTTC CTGTCCTGGG GCGGCACGGG CGGCTCCCAG GTGCGCCAGT ACGTCTACAA GAGCTACATC GAGGGCGCCG TCGACTTCAT CTACGGCAAC GGCGCGCTGG TCGTCGACTC GACCACCATC CAGTCCCTGG ACCGGGGCAG CAGCAACAAC GGCTACATCA CCGCCGCCGC CACCCACTCG TCCAACCCGT ACGGCATCCT GATCACCAGG TCCACGTTGA AGGGGCCGTC GGCGGCCAAG ACCGTGGCGC TGGGCCGCTG CTGGCACGCG GGTGGCGCGG CCGACGCGAT CGGCCAGGTG CTGGTGCGCG ACTCCACGCT CGGCGGTCAC GTCCGGCAGG CGGGCGCGTG GCAGGACATG GGCGGTTTCT CGTGGAAGAC CTGCCGCTTC ACCGAGCACA ACAACTCCGG TTCCGGCGTC ACGACCGGGA CGAGCGACCG GCCGCAGATG AGCGCGTCCA CCGCCGCGAA CCACACCGCG CAGAAGTACC TCGCGGGCAG CGACGGCTGG AACCCCGTGC AGTGA
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Protein sequence | MSPHGTRTTR GAAALSAPLL ALALATPAQA ATTVTVAADG SGDYTTVQAA IAAVSSGSTI KIKPGTYRGQ VSIPAGKPGL VLQGTSGNSA DVVITGSTPA STAGTEGSAT VLNKAKDTSV TGLTMANTYA AHDSQALALY AGGDRQVYRN VRMLGYQDTF LSWGGTGGSQ VRQYVYKSYI EGAVDFIYGN GALVVDSTTI QSLDRGSSNN GYITAAATHS SNPYGILITR STLKGPSAAK TVALGRCWHA GGAADAIGQV LVRDSTLGGH VRQAGAWQDM GGFSWKTCRF TEHNNSGSGV TTGTSDRPQM SASTAANHTA QKYLAGSDGW NPVQ
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