Gene Amir_4472 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_4472 
Symbol 
ID8328669 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp5296902 
End bp5297519 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content77% 
IMG OID644944931 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003102164 
Protein GI256378504 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.590949 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGAGAGG ACACGACCGC GCGCCGGGCG GGCCGGGGCG CGCGCGAGCG GGCGCTGGCC 
GCCGCCGTCC GGCTCTTCGA CGAGCGCGGC ATCACCGCGA CCACCATGGA GGAGGTCGCC 
GCGGCGGCCC CGGTCTCCAA GCGCACCCTC TACGCGCACT TCCCCACCAA GGAGGACCTC 
GTCCTCGCCC AGCTCGACCA CCTCCTGGGC TCCGGCGCGA CCATGCTCGA CGCCCTGCGC 
GACGAGGCCG TCCCGCCCCG CGAGCGGCTG CTGGGGATGT TCGGCCTCGG CCTGTGGCCC 
CGTGGGAACG TGCGCTCCTG CCCGTTCCTG CGCGCCGCCA CCGAGGACCC CGACCCGGAC 
GGCCGCGCGC ACGCCTTCGC CCGCGAGCAG AAGCTGGTCA TGCTGGCGCT GGCCACCGGG 
CTCGTCGCCG AGCTGGGGAT CGCCGAGCCG GAGGCGCTCG CCGAGCAGCT CGTCACCCTG 
TCCGACGGCG TGGCCAGCCG CGCCATGGTG CTCAACGACC CCGACTACGG CCGCCACGCC 
CGCGCCGCCG CCGAGGTCCT GCTCGACCAC GCGCCGCGCC TGGCCGTGTC CGCCGGGAGC 
GCGAACACGT CCGCCTGA
 
Protein sequence
MGEDTTARRA GRGARERALA AAVRLFDERG ITATTMEEVA AAAPVSKRTL YAHFPTKEDL 
VLAQLDHLLG SGATMLDALR DEAVPPRERL LGMFGLGLWP RGNVRSCPFL RAATEDPDPD 
GRAHAFAREQ KLVMLALATG LVAELGIAEP EALAEQLVTL SDGVASRAMV LNDPDYGRHA 
RAAAEVLLDH APRLAVSAGS ANTSA