Gene Amir_3979 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_3979 
Symbol 
ID8328172 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp4662650 
End bp4663261 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content76% 
IMG OID644944453 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003101690 
Protein GI256378030 
COG category[S] Function unknown 
COG ID[COG3226] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGACGAGG ACGACGCGGG GACCGGTGCC CGGACACCCG CGCGGGGGGC GGGTTCGCGC 
AGGCCCGACC CCGGCAGGCG GGACCGGATC ATCGACGCCT GCCTGGACGT GATCGCCGAG 
GTCGGGGTGG ACGGGGCCTC GCACCGGGGC ATCGCCGCCG CGGCCGGGGT GCCGCTGGGG 
TCGATGACCT ACCACTTCGA CGGGATGCGG CAGCTGCTGC GCGAGGCGTT CGGCCGGTTC 
GCGGGGGCCG TGGCCGCCGG GTTCGAGGCG CGCATGGCCG CCGCCGCGAA CGCCGAGGAG 
GCGGCGGCGG CGGTCGTGGA GATCATCACC GTGGACACCC TGAGCACCCA GCGGGACCTG 
GTGCTCACGC ACGAGCTGTA CACCCTGGCC GCGCGCGACC CGGAGTGCCG GGACGTCACC 
AACGCGTGGA TGGCCGCGAG CAGGCGCGCG CTGGAGCGGC ACTTCGACCC GCTCACGGCC 
AGGCTGCTCG ACGCCCTGAT CGAGGGAATG TCGATCCACC GCGCGCTGGA CACCGAGCCG 
CACGACCGGG CCGCCGCCGT GGCCGCCGTC GAGCGGATCA CCGGGCGGAC CAGCGGAGGA 
ACCGCCGGGT AG
 
Protein sequence
MDEDDAGTGA RTPARGAGSR RPDPGRRDRI IDACLDVIAE VGVDGASHRG IAAAAGVPLG 
SMTYHFDGMR QLLREAFGRF AGAVAAGFEA RMAAAANAEE AAAAVVEIIT VDTLSTQRDL 
VLTHELYTLA ARDPECRDVT NAWMAASRRA LERHFDPLTA RLLDALIEGM SIHRALDTEP 
HDRAAAVAAV ERITGRTSGG TAG