Gene Amir_3888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_3888 
Symbol 
ID8328081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp4560100 
End bp4560663 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content71% 
IMG OID644944372 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003101609 
Protein GI256377949 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCTACG ACTCGACAGC CACCCGCGCC CGCCTGCTCG CCGCAGCCCA CGACGAGTTC 
GCCGAGAAGG GCTTCGCCGG GGCGCGCGTG GACCGCATAG CCTCCGCCGC GACGGTCAAC 
AAGCAGGCGA TCTACGCGTA CTTCGGGTCC AAGGAGGCGC TGTTCGACGC GGTGCTCGCC 
CAGCGCTACA CGGTGCTGGC CGACGCCGTC CCGATGGACG CGCGGGATCT GCCCGCCTAC 
GCGGGCGCGC TCTTCGACGA GATCACCAAC GATGCCGGGC TCCAGCGCCT CACCCTCTGG 
AAGACGCTCG AACGCCCGGA GGTGTTCCCC GAGGAGGCCC AGGCGCACCG GGGCAAGGCG 
CAGGCTGTCG TCGATGCCTA CGGCGTGAGC GCGGAGACCG CGATGGACGC CCTGATGCTC 
GTGCTCGCGG CCGCGCAGGC GTGGAACCTC ACCCCGCCTG CCGTCCGCAC CCCAGGAGAG 
CAGGATGAGA CCGCGCGTCG CGCCCGCCAC CGCCACGCGG TCGTGACCGC CGTCGCCGCG 
ATCACCGCGA CATTGCTCGA ATAG
 
Protein sequence
MSYDSTATRA RLLAAAHDEF AEKGFAGARV DRIASAATVN KQAIYAYFGS KEALFDAVLA 
QRYTVLADAV PMDARDLPAY AGALFDEITN DAGLQRLTLW KTLERPEVFP EEAQAHRGKA 
QAVVDAYGVS AETAMDALML VLAAAQAWNL TPPAVRTPGE QDETARRARH RHAVVTAVAA 
ITATLLE