| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3825 |
|---|
| Symbol | |
|---|
| ID | 8328017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 4488564 |
|---|
| End bp | 4488929 |
|---|
| Gene Length | 366 bp |
|---|
| Protein Length | 121 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644944312 |
|---|
| Product | 5-carboxymethyl-2-hydroxymuconate isomerase |
|---|
| Protein accession | YP_003101550 |
|---|
| Protein GI | 256377890 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3232] 5-carboxymethyl-2-hydroxymuconate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0512515 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCAGA TCACCGTCGA GTACTCCGCG TCCCTGACCG ACGCCTTCGA CCGGCGCGCG
TTCGCCCTCG CGCTGCACCC CGTGCTCGCC GAGGTCGCGG GCAGCGACCT GGGGGCGTTC
AAGACCCGCG CCTACCGCCT GGACGAGGCC GTGGTCGGCG ACGGCTCCGG CGAGGCCATG
GTGCACGTCC GCGTCGCCCT CCTCTCCGGC CGCGACGCCG CCACCAAGGC CGCGGTGTCC
GACGCCGCGC TCACCGTGCT CACCGAGCAC CTCGCGGGGG TCACGGGGCA GCGGGTGCAG
GCGACGGTGG AGATCGCCGA ACTGGACAAG GACAGCTACC GCAAGCAGGT CGTCGGCGAC
CTCTGA
|
|---|
| Protein sequence | MPQITVEYSA SLTDAFDRRA FALALHPVLA EVAGSDLGAF KTRAYRLDEA VVGDGSGEAM
VHVRVALLSG RDAATKAAVS DAALTVLTEH LAGVTGQRVQ ATVEIAELDK DSYRKQVVGD
L
|
|---|
| |