| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3603 |
|---|
| Symbol | |
|---|
| ID | 8327793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 4214919 |
|---|
| End bp | 4217807 |
|---|
| Gene Length | 2889 bp |
|---|
| Protein Length | 962 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 644944098 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003101338 |
|---|
| Protein GI | 256377678 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0813652 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCTC TGCTCGTCGC CGCCCCGAAC ACCCCCGTCG CCGCCCCTGG CCCGAGGGTG
CGCTCGGCCG TCCCCGGCCG CCAGCGCTGG GACGTCCCGC AGGTGCTCAG GCGCCCCGTG
ACCGCCCACG CCGTCGAGAC CGCGCTGCTC CGCCTGCCCG GCGTCACCAC CGCGCGCGCC
AACCCCACCA CCGGCCGGGT CCTGGTGCTG CACGACCGCC CGCTCGACGT CACCGAGGTC
GCCCGTGCCC TGCGGGTCGC CGTCACCATC GCCGCGCGCG TGGTGGCCGA CCGCATCGCC
AAGGCGACCG CGGCGCACGC TGGCCCGACG GGCGGCGATC CAGCTGGCGA TGACCCGACG
GGCGGCGATC CGGCGAACGG CGACCTGGCG AACGGCGGCC CGATGGGCGG CGCTCGACCG
GGCGCAGGCT CGACGGGCCG CAGCGGAGCG GGCCGAGGCC GCGCCGGTGC CGTCCGGGCT
GGAGCTGCTG CCGGCCGGGC CGGTGGTGGT CGGGCAGGCG CCAGCGGTGC AGGCGCCGGT
GGCGGCCGTG CCAGTGGTGA TCAGGCCGCA GGTGATCAGG TCGCACCGGT CGGCGATCAG
CCGGAGCGCG GCGCCTCGGC TGCCCGCGCG GCCGGTGCGG TCGACAGCGG CCGGTCGACC
GCCGTGGTCG TGCTCGCCGC CGTGGCCGCG CTGGGCAGGA GCATCGGACG TGCCGGGCTG
GGCGGGACCA CCGGCGCCGG ATCGGGCGCG AGCGCCACGC CGGGCGACCG CGCCGCGCTG
GAGCAGTCCA CCACGCGGGG CGGCGCCGCC TGGCTTGACC GGTTCGCCGC ACGGGGGAGT
GGGACCGCCG CACGTGGGAC CGCAGCGCGT GGGACCGCCG CACGTCGTGC TGCCGTGAGC
GGCGTCGCCG TGGGTGGTGC CGCGCGGGGG AGCGGTGGCA CCGCGCCGGA CCGGTCCACC
GGGGGCGGGT CACTCGGTCC AGGGTCCACC GGGCTCGGGT TCGCCGTGGG CGCCGCGCTG
CGCCGACCGG TCGCGCTCGT CGTCGCGGTC ACCGGGCTGG TCACCGCCGC GCTGGGCCGG
GCGGTCCGGG CCGTGCTCGC GCCGCTGCGC CGCACCGCCC TGGGCGGGCG CCTCGCCGCC
CACCCGCTCG CCAAGATCAT CCGGTCGCAC CGGGGCGCGC TGGCCAAGGC CGCCACGCTG
TCGGTGCTCT GCCAGTTCGC CGAGCTGTCG CTCGGCGTGC TCCTCGGCTG GGTCGCCCTG
ATCCTGATCA AGGGCGAGTT CGCCCTGCTG ACCACCCTCG GCGTCGTGGG CGCGAGCACC
CAGCTGTGGG TGCTCGCGGG CGCCGCCGCC GTGGCCTGCG GGGTCGTCGC GGGTCTGTCC
TACCTGTCCG GTCTGCGGTG GCGCGCGCTC GGGCAGGCCG TCCGGAACGA GTGGCGCGCC
CGGCTGCACG ACCACGCGCA GCGCCTGGAG ATGCGGCACA TCCAGCGGGA GCGCCCCACC
CGCGTCGCGG GCGTGCTCGC CGACGACGTC GACCAGCTCG GCGCGTTCTT CGCGGGCCCG
GCCGCGGGCG CGCTGCAGCT CGCCACCAGC GTCCTCGTGC TCGTCCCGGC GTTCCTGCTG
TTCGCGCCGA CCGTCGCCTG GGTCGCGTTC CTGCCCATGC CGCTCGTCGC CGCGCTGTCC
CTGCGCCACC GCGACCGCTC CACCGCCGAC CACGCCGACT CCGGCGAGCA CCGCGCCCGG
CTGCGCAGCA GGCTCACCAC GAACCTGGAG GCCGCCGCCA CCGTCAAGTC CTCCTGCGCG
GAGGACCACG AGGCGCGCGA GGTCCAGCGG CTCGGCCGCG AGTGCGCCGA GGCCGAGCGG
CGCACCAACC GGCACGGCAT CCGGCACAGC GAGGGCGTCC GCGCCCTCAC CACCGCCTCC
ATGACCGGCA CCCTGCTCGT CGGTGGCCGC CAGGTGCTCA GCGGGGCGGT CCCGTTCGAG
GTGTTCAGCC CGCTCATCGG CCTGCCCCAG CAGGTGATCC TGCGGCTGTC CGGCCTCGGC
ACGACCGTCG ACCAGTACCA GCGCACCCTG TCCGCGTTCG ACCGCGTCCA GCACCTGCTG
TCCCTGCCCG CCGAGCCCAC CGGCGGTCGC AGGCTCGCCC GCGACGCGGT CAGGGGCGAG
ATCGTGCTCA ACCGGGTCTG CTACGCCTAC CCCGGTCGCC CGCGCGTGCT GCGGGAGCTG
TCGCTGCGCG CGGAACCCGG CCAGGTCACC GGCATCGTCG GCGCGACCGG CTCGGGCAAG
ACCACGATCG CGAAGCTGCT GACGCGCTTC CAGGAAGCCG ACTCCGGCGA GGTCCTGCTC
GACGGCCACG ACGTGCGCGG CCTGCACCTG CCCGACCTGC GCGCCGCCAT CGGGTTCGTC
GCCCAGGACG CCCACCTGTT CGACGGCACG ATCGCGGACA ACATCCGCTA CGGCGCGTTC
TCCGCCACCG ACGAGCAGGT CAGGGCCGCC GCCCGCACCG CGGAGGCGCA CGAGTTCGTC
GAGGCGCTCC CGCTGGGCTA CGACACGCTG ATCGGCGAGC ACGGCGCCGC GCTGTCCGGA
GGGCAGCGGC AGCGGATCGT GCTGGCCAGA ACGGTGCTGC GGAACCCGCC GGTCGTGGTC
CTGGACGAGG CGACCTCGGC CGTGGACAAC AAGACCGAGG CCGCGATCCA GCGCGCGCTG
GCCCGGTTCT CCAAGGGCCG CACCACGATC GTGATCGCGC ACCGGCTGTC CACCATCCGC
AACGCCCACC GCATCCACGT CCTGGACAAG GGCGGGGTCG TCGCCGAGCA GGGCACCCAC
GACGAGCTGC TCGCCAGATC GGGCCTCTAC GCCTCCCTGT GGCAGCTCCA AGCGGGCGCC
AAGCCGTGA
|
|---|
| Protein sequence | MTSLLVAAPN TPVAAPGPRV RSAVPGRQRW DVPQVLRRPV TAHAVETALL RLPGVTTARA
NPTTGRVLVL HDRPLDVTEV ARALRVAVTI AARVVADRIA KATAAHAGPT GGDPAGDDPT
GGDPANGDLA NGGPMGGARP GAGSTGRSGA GRGRAGAVRA GAAAGRAGGG RAGASGAGAG
GGRASGDQAA GDQVAPVGDQ PERGASAARA AGAVDSGRST AVVVLAAVAA LGRSIGRAGL
GGTTGAGSGA SATPGDRAAL EQSTTRGGAA WLDRFAARGS GTAARGTAAR GTAARRAAVS
GVAVGGAARG SGGTAPDRST GGGSLGPGST GLGFAVGAAL RRPVALVVAV TGLVTAALGR
AVRAVLAPLR RTALGGRLAA HPLAKIIRSH RGALAKAATL SVLCQFAELS LGVLLGWVAL
ILIKGEFALL TTLGVVGAST QLWVLAGAAA VACGVVAGLS YLSGLRWRAL GQAVRNEWRA
RLHDHAQRLE MRHIQRERPT RVAGVLADDV DQLGAFFAGP AAGALQLATS VLVLVPAFLL
FAPTVAWVAF LPMPLVAALS LRHRDRSTAD HADSGEHRAR LRSRLTTNLE AAATVKSSCA
EDHEAREVQR LGRECAEAER RTNRHGIRHS EGVRALTTAS MTGTLLVGGR QVLSGAVPFE
VFSPLIGLPQ QVILRLSGLG TTVDQYQRTL SAFDRVQHLL SLPAEPTGGR RLARDAVRGE
IVLNRVCYAY PGRPRVLREL SLRAEPGQVT GIVGATGSGK TTIAKLLTRF QEADSGEVLL
DGHDVRGLHL PDLRAAIGFV AQDAHLFDGT IADNIRYGAF SATDEQVRAA ARTAEAHEFV
EALPLGYDTL IGEHGAALSG GQRQRIVLAR TVLRNPPVVV LDEATSAVDN KTEAAIQRAL
ARFSKGRTTI VIAHRLSTIR NAHRIHVLDK GGVVAEQGTH DELLARSGLY ASLWQLQAGA
KP
|
|---|
| |