Gene Amir_3046 details

Gene Information

• Locus tag: Amir_3046
• ID: 8327236
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 3521926
• End bp: 3523956
• Gene Length: 2031 bp
• Protein Length: 676 aa
• Translation table: 11
• GC content: 75%
• IMG OID: 644943571
• Product: short chain dehydrogenase
• Protein accession: YP_003100811
• Protein GI: 256377151
• COG category: [S] Function unknown
• COG ID: [COG3347] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.854691
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCGTGC CCGAGGAGCT GATCGCCCGC AGCAACGCGC TGGGGAGCGA TCCGCGCACC 
ACCAACTACG CGGGCGGCAA CACCTCCGCC AAGGGCGCCG GACCCGACCC GGTCACCGGC 
CGGGACGTGG AACTGCTGTG GGTCAAGGGA TCGGGCGGCG ACCTGGGCAC GCTCACCCCG 
GCCGGGCTGG CGGTGCTGCG GCTGGACCGC TTGCGCGCGC TGGTCGACGT CTACCCCGGC 
GAGGCGCGCG AGGACGAGAT GGTCGCCGCG TTCGACCACT GCCTGCACGG CAGGGGCGGG 
GCCGCGCCGT CGATCGACAC CGCCATGCAC GGGCTGGTCG ACGCCGCGCA CGTGGACCAC 
CTGCACCCGG ACTCCGGCAT CGCCCTGGCC ACCGCCGCCG ACGGCCCCGC CCTGACCCGC 
GAGTGCTTCG GCGACCGGGT GGCCTGGGTC GACTGGCGCA GGCCCGGTTT CCAGCTGGGG 
CTGGACATCG CGGAGGTCCA GCGGGCCAAC CCGGACGCCA TCGGCGTGGT CCTGGGCGGG 
CACGGCATCA CCGCGTGGGG CGCGACCTCG CAGGAGTGCG CCGCGCACTC GCTGGAGATC 
ATCCGCACCG CGGAGGAGTT CCTGGCGCGC AAGGGTTCCG AGGAGCCGTT CGGCGCGGTC 
GTGCCCGGTT TCCAGGCCCT GCCCGAGGAC GAGCGGCACG CGCGCGCCGC CGCGCTCGCC 
CCGGTGGTCA GGGGCCTGGC CTCCACCGAC GCGCGCCAGG TCGGGCACTA CACCGACTGC 
CACGCCGTGC TGGACTTCTG CGCGCGCGAG AAGCTCGCCG AGCTGGCCGC GCTGGGCACC 
TCGTGCCCGG ACCACTTCCT GCGCACCAAG GTCCGGCCCC TGGTGCTGGA CCTGCCGCCG 
TCCACGCCCC TGGACGAGAC CGTCGCACGG CTGCGCGAGC TGCACGCCGC CTACCGCGAG 
GACTACCGCG CCTACTACGA GCGGCACGCG CTCCCCGACT CGCCGCCGAT GCGCGGCGCG 
GACCCGGCGG TCGTGCTCGT GCCGGGCGTG GGCATGTTCT CCTTCGGCAA GGACAAGCAG 
ACCGCGCGCG TGGCCGGGGA GTTCTACGTC AACGCGGTCA ACGTCATGCG CGGCGCCGAG 
TCCGTCTCCC GGTACGCGCC GATCCCCGAG TCGGAGAAGT TCCGCATCGA GTACTGGGAG 
CTGGAGGAGG CCAAGCTCCG CCGGATGCCC GCGCCCAAGC CGCTCGCCGG GCGCGTCGCG 
CTGGTCACCG GCGCGGGCTC CGGGATCGGC AAGGCGGTGG CGGAGAGGCT CACGGCGGAA 
GGGGCCTGCG TCGTCGTGGC CGACCTGGAC GGGGCGTCCG CGAAGGCCGT CGCCGAGGGG 
ATCGGCGGGC CGGACCGGGC GGTTCCGGTG GTCGCCGACG TCACCGACGC CGCGCAGGTG 
GACGCGGCGG TCGCGGCGGC GGCGCTCGCG TTCGGCGGGC TCGACCTGGT GGTCAACAAC 
GCCGGGCTGT CCATCTCGAA GTCGTTGCTG GACACCACCG AGCAGGACTG GGACCTCCAG 
CACCGGGTCA TGGCGCGCGG CTCGTTCCTG GTCGCCAAGG CCGCCGCCCG CACCATGATC 
GACCAGGGCA TCGGTGGCGA CGTCGTCTAC ATCGCCTCCA AGAACTCGGT CTTCGCCGGG 
CCCAACAACG TCGCCTACGG CGCGGCCAAG GCCGACCAGG CGCACCAGGT GCGGCTGCTG 
GCCGCCGAGC TGGGCGGGCA CGGCATCCGC GTCAACGGCG TCAACCCGGA CGGGGTGGTG 
CGCGGCAGCG GCATCTTCGC GGGCGGCTGG GGGGCGCGGC GGGCCGCCGT GTACGGGGTG 
CCCGAGGAGG AGCTGGGCGC GTTCTACGCG CAGCGCACGC TGCTCAAGCG CGAGGTGCTG 
CCCGAGCACG TGGCGGCGGC GGTGTTCGCG CTGACCGGCG GGGAGCTGTC GCTGACCACG 
GGGCTGCACG TGCCGGTCGA CGCCGGTGTC GCCGCGGCGT TCCTGCGGTA G 

 

Protein sequence

MSVPEELIAR SNALGSDPRT TNYAGGNTSA KGAGPDPVTG RDVELLWVKG SGGDLGTLTP 
AGLAVLRLDR LRALVDVYPG EAREDEMVAA FDHCLHGRGG AAPSIDTAMH GLVDAAHVDH 
LHPDSGIALA TAADGPALTR ECFGDRVAWV DWRRPGFQLG LDIAEVQRAN PDAIGVVLGG 
HGITAWGATS QECAAHSLEI IRTAEEFLAR KGSEEPFGAV VPGFQALPED ERHARAAALA 
PVVRGLASTD ARQVGHYTDC HAVLDFCARE KLAELAALGT SCPDHFLRTK VRPLVLDLPP 
STPLDETVAR LRELHAAYRE DYRAYYERHA LPDSPPMRGA DPAVVLVPGV GMFSFGKDKQ 
TARVAGEFYV NAVNVMRGAE SVSRYAPIPE SEKFRIEYWE LEEAKLRRMP APKPLAGRVA 
LVTGAGSGIG KAVAERLTAE GACVVVADLD GASAKAVAEG IGGPDRAVPV VADVTDAAQV 
DAAVAAAALA FGGLDLVVNN AGLSISKSLL DTTEQDWDLQ HRVMARGSFL VAKAAARTMI 
DQGIGGDVVY IASKNSVFAG PNNVAYGAAK ADQAHQVRLL AAELGGHGIR VNGVNPDGVV 
RGSGIFAGGW GARRAAVYGV PEEELGAFYA QRTLLKREVL PEHVAAAVFA LTGGELSLTT 
GLHVPVDAGV AAAFLR