| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_2103 |
|---|
| Symbol | |
|---|
| ID | 8326292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 2324805 |
|---|
| End bp | 2326415 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | 644942653 |
|---|
| Product | transcriptional regulator, PucR family |
|---|
| Protein accession | YP_003099894 |
|---|
| Protein GI | 256376234 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2508] Regulator of polyketide synthase expression |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACCCGA CCGTGGCGGA GGCGTTATCC CTGTCCGTGG TGCGACAGGG TCAGCCCAGG
GTGGTCGCGG GCGCGGAGGG GCTGGGGCGG TCGGTGCGCT GGGTGCACGT GGCCGAGGTC
GCCGACATCG CGCCGCTGCT GCGCGGCGGG GAGCTGGTGC TGACCAGCGG GATCGCCCTG
CCGGAGGAGC CGGAGGCGCT GCGCGAGTAC GTGGCGGGGC TGGCCGGGGT GGGGGCGACC
GGGCTGGTCG TGGAGCTGGT GCGGCGGTGG CGGGGCGGGG TGCCGGGGGC GCTGGTCGCG
GCGGCGCAGG AGCACGGGCT GCCACTGGTC ACGCTGTCGG TGGAGGTGCG GTTCGTCGCG
GTCACCGAGG CGGTGGTGTC GCTGATCGTG GACGCGCAGC TCGCCGAGCT GCGGGCCGCC
GAGCAGGTGC ACGAGGCGTT CACGGCGCTG ACCGTGGCGG GCGCGGAACC GGCCGAGGTG
CTGCGGGAGG TGGCGCGCAC GTCGGGGCTG CCGGTGGTGC TGGAGACCCT GGGGCACGAG
GTGCTGGCGT ACGACGCGGC CGGGCAGGAC CCGGTGGCGC TGCTGGCCGA CTGGGGCGCG
CGCTCGCGCG AGGTGTCCGG GGCCGGGCGG ACCGCCTACC ACGCGGGGCC GGGGTGGCTG
GTGACCGCGG TGGGGGCGCG CGGGTCGGAC TGGGGCAGGC TCGTGCTGGT CAGCGCGGCC
GAGCCGCCGC ACCGGCACGT GGTGGTCGCG GAGCGGGCGG CGTCCGCGCT GGCCGTGCAC
CGGCTGGTGG CGCGGGACCG GGAGTCGCTG GAGCGGCAGA CGCACCGCAC GCTGCTCACC
CAGCTGCTGG ACCGGCCGCC CGCCGACCTG CCCGCGCGGG CCGCCGCGCT GGGGGTGCCG
CTGGAGCGGC GGCAGCTGCT CGGGGTGGCG ATCCGGCCGG GCGCGGCGAC CACGCCGGGG
CAGTCGCTGG CCACGCAGGA GGTGCTGCGG GACCTGGCCG AGGCGACGGC GCTGGCGGCC
CGGCGGGTGC CGGTGCCCGC GCTGGTCGGG GTGGTGGACG ACACGAGCGT GCGGGCGCTG
CTGGCGCTGC CGCCGCAGGC CCCGGTGGAG GGGGCGCTGC GGCAGTTCGC CCGCGAGGTG
CACCGGGCGG CGGCGGCCAC GCAGCACGGG CTGCCGGTGG TGGTGGCGGT CGGGACGGTG
GTGTGCGGGG TGCCGGAGGT GCGGCGCAGC CTCGGGGAGG CGGCGCACGT GGCGGGGGCG
GCGCTGCGGT CGCCGGGGGT GCGGCTGTAC CACCGGCTCG ACGACGTGCG GTTGCGCGGG
CTGCTGCACC TGCTGCGCGA GGACGAGCGG GTGCGGGCGT TCGCCGACCG GGAGCTGGGC
GTGCTGCTGG CCCGCGACCG GGCGCACGGG AGCAGGCTGG TGGAGCTGCT GCGGCACCTG
TGCGAGCAGG GCGGGAACAA GTCGGCGGCC GCGGCGGCGG CGCACCTGTC GCGGACGGCG
TACTACCAGC AGCTGGCGCG GGTGCAGCAG GTGCTCGGGG TGTCGCTGGA GGACCCGGAG
TCGTTGCTGT CGCTGCACAT CGCGCTGCTG GTGCGCGAGC TGGACCGCTA G
|
|---|
| Protein sequence | MYPTVAEALS LSVVRQGQPR VVAGAEGLGR SVRWVHVAEV ADIAPLLRGG ELVLTSGIAL
PEEPEALREY VAGLAGVGAT GLVVELVRRW RGGVPGALVA AAQEHGLPLV TLSVEVRFVA
VTEAVVSLIV DAQLAELRAA EQVHEAFTAL TVAGAEPAEV LREVARTSGL PVVLETLGHE
VLAYDAAGQD PVALLADWGA RSREVSGAGR TAYHAGPGWL VTAVGARGSD WGRLVLVSAA
EPPHRHVVVA ERAASALAVH RLVARDRESL ERQTHRTLLT QLLDRPPADL PARAAALGVP
LERRQLLGVA IRPGAATTPG QSLATQEVLR DLAEATALAA RRVPVPALVG VVDDTSVRAL
LALPPQAPVE GALRQFAREV HRAAAATQHG LPVVVAVGTV VCGVPEVRRS LGEAAHVAGA
ALRSPGVRLY HRLDDVRLRG LLHLLREDER VRAFADRELG VLLARDRAHG SRLVELLRHL
CEQGGNKSAA AAAAHLSRTA YYQQLARVQQ VLGVSLEDPE SLLSLHIALL VRELDR
|
|---|
| |