Gene Amir_2001 details

Gene Information

• Locus tag: Amir_2001
• ID: 8326186
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 2216789
• End bp: 2218768
• Gene Length: 1980 bp
• Protein Length: 659 aa
• Translation table: 11
• GC content: 78%
• IMG OID: 644942550
• Product: Xylose isomerase domain protein TIM barrel
• Protein accession: YP_003099795
• Protein GI: 256376135
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1082] Sugar phosphate isomerases/epimerases

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0197966
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCTCC TCGACGACTC CGGGGTCCGG GCGAGCCCGC TGTGGGCGGT GGACGCCGGC 
GGCAGCGACA CCGCCGTCGT CGGCCCCGGC GGGCTGGCGC GGCGCGGCAG CGTCAACCCG 
GCCTCGTCCG ACGACGCGGA CGCCGAGTGG CGCGCGCTGC TCGCGGACCT GGCCGAAATC 
GGCGGCGCGG GCTGGATCGC CACCGCCACC CTGGACCCGG CCGCGCCGGA CGAGGAGCTG 
GCCAGGCTGC GCGACCTCGC GCTCGACGCG GGCCTGCGCG GACCGGTGGT GGTGTCGAAC 
GACGCCCTGC CGTGGCTGGT CGCGCTGGGC GGCCGGGGCG TGGTCGTGGT GTGCGGCACC 
GGGTCCGGCT TCCTGGCCTG CTCCGGCGAC GCGCCCCCGG TGCGGGTGGG CGGCTGCGAG 
TACCTCGGCA GCGACGAGGG CAGCGCGTTC GACCTGGGCC TGGCGGGCCT GCGGGCGGCC 
GTGCGCGGCG CGGACGGCCG AGGCCCCCGC ACGGCCCTCA CCGACGCCTA CCACCCCTCA 
CCCGCCGCGC TCGCCCGCGA GCTGGCCGAC CGGTCGCACC CCAAGGCGGC GGTCGCGGCG 
CTGGCCCCGC AGGTCTGCCG GGCCTGGGTC GACGGCGACG AGGTCGCGGC GGGCATCGTC 
GACCGGGCGC TCGACGACCT GGTCACCGGC GCGAGGGCGG CGGCCGAGGC GGCGGGCCTG 
CTCCCTGGAA CCCCAGGGGC GCAACCCTTC CCGATCGCGG TGGGCGGGGG AGTGCCGCAC 
GGCTGCCCGG AGTTCCTGGC GGAGCTGGAG ATCCGCCTGC GCGCCACGCT CCCGGTCACC 
GAGGTCCTGC CGGTGGACGA GCCGGCCCGC ACCGTCCGCG CCGCGCTCCA GTCCTGCGAG 
CGGGCAGGCG AGATCGTGCT GCCGCGCGCC ATCGAGGACC ACTCCGCCTG GCTGCTCGAC 
CTCGCGAGGG TCCCGAGGCG ACGGGAACCC GAAGTGTCCA CAGTGGACCA AACCCCGTCC 
GCCCCGCCCG TCCGGCTCGG CCTGTGCCTG GCGTCCTGGG GCGGTTCGGG CCTCACGGCC 
GCGCTCGCGG CGGCGGCCGG CGCCGACGTG GTCGACCTGC CCACCGACAC CACCTCGGGC 
CTGTTCGACG CGGTCCGCTG GCAGCGCGAC CCCCGCTACC GGGAGGAGAC CGCCGAGGCG 
CTGCGCGGCG CGCGCGTGGG CTGCCTGAGC AACAGCCGCG ACACGCAGCT CCTGCTCGGC 
CCGCACGGCC CGCACACCGA CCCGGTCCAC CGGGGGACCG CCGAGGACAA GGCCGCCCAC 
GCCAGGCGGC ACGCCGAGGC CACCCTCCGC GCCGCCGCCG ACCTGGGCGT CCCCCAGGTG 
CGGCTGATGC TCGGCGTCCC CGACCTGTCC CGCTGGTTGT CCTGGTGGCA CAGCGACGTC 
TCCTGGTCCG ACAACGTCGA CCACTGGCGC AAGGCGGCCA CCCCACTCCT CGACCTGGCG 
GCAGAGCTGG GCGTCACCGT CCTGGTCGAA CCCCACCCCA AGCAGGTCGC CTACGACCCG 
GCCAGCGCCG AGGCCCTGCT CGACGCCACC GGGGACCACC CGGCCGACGT GCGACTGTGC 
CTGGACGTGG CGAACCTGGC GGCGGTCGGC CACGACCCGG TGGCCGCGGT CCACCGCCTC 
GGCGACCGGA CGGCGGCGGC CCACGCCAAG GACCTCCAGC GCTGGACCGG ACCCGGCGAC 
CCGTGCGGCG CGGGCTGGTC CCGCTACGGC CCCGGCCCCG CGATCCGCTT CCGCACCCTG 
GGCGCGGGCG AGCTGCCGTG GCCCGCCATC ACCGCCGCGC TGCTCGACGT CGGCTTCACC 
GGCGCGCTCT ACGTCGAGCA CGAGGACGCC CTCGTCCCCA GGGAGCAGGG CGCGGCCACC 
TCGGCGCGCC TGCTGCGCGA GCTGCTCCCG CAGTCCCGTC CGCAGGGGAG GACCTGGTGA 

 

Protein sequence

MSLLDDSGVR ASPLWAVDAG GSDTAVVGPG GLARRGSVNP ASSDDADAEW RALLADLAEI 
GGAGWIATAT LDPAAPDEEL ARLRDLALDA GLRGPVVVSN DALPWLVALG GRGVVVVCGT 
GSGFLACSGD APPVRVGGCE YLGSDEGSAF DLGLAGLRAA VRGADGRGPR TALTDAYHPS 
PAALARELAD RSHPKAAVAA LAPQVCRAWV DGDEVAAGIV DRALDDLVTG ARAAAEAAGL 
LPGTPGAQPF PIAVGGGVPH GCPEFLAELE IRLRATLPVT EVLPVDEPAR TVRAALQSCE 
RAGEIVLPRA IEDHSAWLLD LARVPRRREP EVSTVDQTPS APPVRLGLCL ASWGGSGLTA 
ALAAAAGADV VDLPTDTTSG LFDAVRWQRD PRYREETAEA LRGARVGCLS NSRDTQLLLG 
PHGPHTDPVH RGTAEDKAAH ARRHAEATLR AAADLGVPQV RLMLGVPDLS RWLSWWHSDV 
SWSDNVDHWR KAATPLLDLA AELGVTVLVE PHPKQVAYDP ASAEALLDAT GDHPADVRLC 
LDVANLAAVG HDPVAAVHRL GDRTAAAHAK DLQRWTGPGD PCGAGWSRYG PGPAIRFRTL 
GAGELPWPAI TAALLDVGFT GALYVEHEDA LVPREQGAAT SARLLRELLP QSRPQGRTW