| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0665 |
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| Symbol | |
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| ID | 8324827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 734160 |
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| End bp | 737723 |
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| Gene Length | 3564 bp |
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| Protein Length | 1187 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644941208 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003098474 |
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| Protein GI | 256374814 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCAGC CCGGCCCGCT GTCCGGCCTG CTGACCGCCG TCCTGCCCGA CAAGGCCCTG
CGCGCCCTGG CCGACGCCGC GGGTTCCCCC GAGCTGGAGC TGGAGGGACC GCCCGCGGCC
CGGCCCCTGG TGGCCGCCGC GCTCTCGCGC ACCTCCCCGG TGCTCGCCGT GACCGCCACC
GGGCGGGAGG CCGAGGAGCT GGCCTCGGTC CTGCGCGACC TGGTCGGACC CGAGGCGGTG
GCGATCTTCC CGTCCTGGGA GACCCTGCCG CACGAGCGGC TGTCCCCCAG GGCCGACACG
GTCGGCGCCC GCCTCCAGGT GCTGCGCAGG CTCGCCCACC CCGGCGACCG GCCGCTGCGC
GCGGTCGTGG CCACGGTCCG CAGCCTCATC CAGCCCATGG CCCCCGGCCT CGGCGACCTG
GAGCCGCTCG ACCTCGCCAC CGGCTCCGAG CACGACTTCG ACGCCCTCCT GCACCGGCTG
GCCGAGCTGG CCTACACCCG CGTCGACATG GTCGAGAAGC GCGGCGAGTT CGCCGTGCGC
GGCGGCATCC TGGACGTCTT CCCGCCCACC GCCGAGCACC CGCTGCGCGT GGAGTTCTGG
GGCGACGAGG TCACCGAGAT CCGCCCGTTC TCGGTGGCCG ACCAGCGCTC CCTGCCCAAG
CAGGTCGACG CGTTCACCGC CCCGCCGTGC CGCGAGCTGC TGCTCACCGA GCGGGTCCGC
GCCCGCGCCC AGGAGCTGGC CGCCGAGCAC GAGGCCGACG CGCAGCTCGC CGAGATGCTC
ACCAAGCTCG CCGAGGGCAT CCCGTCGGAG GGCATGGAGG CGCTGATCCC CGCCCTGTGC
GATGGCGAGC TCCAGCTGCT CACCGACCTG GTCCCGGACG GCACGCACGT GCTGGTCAAC
GACCCGGAGA AGATCCGGGC CCGTGCCCGC GACCTGGTCC GCACCGGCCA GGAGTTCCTG
GAGGCCTCCT GGATGGCGGC GGCGGGCGGC GGCAAGGCCC CGATCGACCT CGGCGCCTCC
GCCTACCGCT CGCTCGACGA GGTCGCCGAC GCCGCGCGCG CCGCCGACAA GCCCTGGTGG
ACGCTCAGCC AGCTCACCAC CGAGGGCTCG GACGTGCTGC GCCTGGAGTT CAAGCACGTC
CACGCCTACC AGGGCGACGT GGACCGGGCG TTCGCCGACC TGCGCGCCCA CACCGCCGCG
GGCGGCACCG CCGTCCTGGT CGTGCCCGGC ACGGGCACCG CCCAGCGCGC CACCGAGCAG
CTGCGCGAGG CCCAGGTCGG CGCGGTGTGC GTGGACTCGC TGGACGAGCC GCCGAGGACC
GGCGCGGTCA CCGTGGTGCG CGGCGCGCTG GAGGACGGCT TCGCGCTGCC CGAGCTGGCC
CTGGTGGTGC TCACCGAGAC CGACCTGACC GGCGGCCGGG GCGGGACGTC CACGAAGGAC
ATGCGGCGGA TGCCGTCCCG CCGCCGCAAC GCCGTCGACC CGCTCGCCCT CAGGACCGGC
GACTACGTGG TGCACGAGCA GCACGGCATC GGCCGGTACG TGGAGATGGT GCAGCGCACC
GTCGCGGGCG CCACCCGCGA GTACCTGGTG CTGGAGTACG CCTCCAGCAA GCGCGGCCAG
CCCGGCGACC GGCTGTTCGT GCCCACCGAC CAGCTCGACG AGGTCTCCCG CTACGTCGGC
GGCGAGCTGC CCACGCTCAA CAAGCTCGGC GGCTCGGACT GGAAGAACAC CAAGGCCAAG
GCCAAGAAGG CGGTCAAGCA GATCGCCGCC GAGCTGGTGC AGCTCTACGC CGCCCGGCAG
TCCGCGCCCG GCCACGCGTT CGCGCCCGAC ACCCCGTGGC AGCGCGAGCT GGAGGACGCG
TTCCCGTTCA CCGAGACCGT CGACCAGATG GCCGCCATCG ACGAGGTCAA GGCGGACATG
GAGCGCGGCG TCCCGATGGA CCGGGTCATC TGCGGCGACG TCGGCTACGG CAAGACCGAG
ATCGCGGTGC GCGCGGCGTT CAAGGCCGTG CAGGACGGCA AGCAGGTCGT GGTGCTGGTG
CCCACGACCC TGCTGGCGCA GCAGCACCTC AACACGTTCA CCGAGCGGAT GCGCGCGTTC
CCGGTCGTGG TGCGGGGCCT GTCCCGGTTC ACCGACCCGA CCGAGGCAGA GCAGACCACG
ACGGGGCTCG CCGAGGGCGA CGTCGACGTG GTGATCGGCA CGCACCGGCT GCTGCAGAAG
GGCCTGCGGT ACAAGGACCT CGGCCTGGTG ATCGTGGACG AGGAGCAGCG CTTCGGCGTC
GAGCACAAGG AGCACATCAA GGCGCTGCGC ACGCACGTGG ACGTGCTGAC GATGTCCGCG
ACGCCGATCC CGCGCACCCT GGAGATGTCG CTGGCGGGCA TCCGCGAGAT GTCCACGATC
CTCACCCCGC CCGAGGAGCG GCACCCGATC CTGACCTACG TCGGCGGCTA CGCAGACAAG
CAGGTCGGCG CGGCCATCCG GCGCGAGCTG CTGCGCGACG GCCAGGTGTT CTACGTGCAC
AACCGGGTCT CCTCGATCGA GAAGGCCGCC CGGCGCATCC GCGAGCTGGC GCCCGAGGCG
CGCGTGGTCA CGGCGCACGG CCAGATGAAC GAGGACAAGC TGGAGAAGAT CATCCAGGGG
TTCTGGGAGC GCGAGTACGA CGTCCTGGTG TCCACCACGA TCGTCGAGAC CGGCCTGGAC
ATCTCCAACG CCAACACGCT CATCGTGGAG CGCGGCGACC TGCTCGGCCT GTCCCAGCTG
CACCAGCTGC GCGGGCGCGT CGGCCGGGGC CGCGAGCGCG GGTACGCGTA CTTCCTCTAC
CCGCCGGAGT CCCCGCTCAG CGAGACCGCG CACGACCGGC TCGCCACCAT CGCGCAGAAC
ACCGAGCTGG GCGCGGGCAT GGCGGTGGCC ATGAAGGACC TGGAGATCCG GGGCGCGGGC
AACATCCTCG GCGCCGAGCA GTCCGGGCAC ATCGCGGGCG TCGGCTTCGA CCTGTACGTG
CGGCTGGTCG GCGAGGCGGT CGAGGCGTTC CGCCGCTCCG CGGGGGCCGA CGGCGAGCTG
GAGGTCGAGC CTGCCGAGGT GCGCGTCGAG CTGCCGGTGG ACGCGCACAT CCCGCACGAC
TACGTGCCGG GCGAGCGGCT CCGGCTGGAG GCGTACCGCA AGATCGCGGC GGCCGTCGAC
GAGGCGGGGC TGACGGCGGT GCGGGACGAG CTCAAGGACC GCTACGGCGC GCCGCCGCTG
CCCGTGGAGC GGCTGCTGGA CGTGGCCAGG CTGCGGCACA CCTGCCGCGC GCACGGCGTC
ACCGAGGTCG CCCTGCAGGG CAGCTCGATC CGGTTCGCGC CGCTGGAGCT GAAGGACTCG
CAGGTGGTTC GGCTGCGCAG GCTGCACCCC AAGGCGGTCT ACAAGCAGGC CGTCTCGACG
ATCACGACGC CTCGGCCCAC CGAAGGCGCG GCGGGCGGCC GGATGGGCGC GCCCCCGCTG
CGCGACCAGG AGTTGCTCGC CTGGTGCGCC CACTTCCTGG AATCACTCGC GGGAGCGCCC
GTGAGCGGTG TCACGAGTTC GTGA
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| Protein sequence | MSQPGPLSGL LTAVLPDKAL RALADAAGSP ELELEGPPAA RPLVAAALSR TSPVLAVTAT
GREAEELASV LRDLVGPEAV AIFPSWETLP HERLSPRADT VGARLQVLRR LAHPGDRPLR
AVVATVRSLI QPMAPGLGDL EPLDLATGSE HDFDALLHRL AELAYTRVDM VEKRGEFAVR
GGILDVFPPT AEHPLRVEFW GDEVTEIRPF SVADQRSLPK QVDAFTAPPC RELLLTERVR
ARAQELAAEH EADAQLAEML TKLAEGIPSE GMEALIPALC DGELQLLTDL VPDGTHVLVN
DPEKIRARAR DLVRTGQEFL EASWMAAAGG GKAPIDLGAS AYRSLDEVAD AARAADKPWW
TLSQLTTEGS DVLRLEFKHV HAYQGDVDRA FADLRAHTAA GGTAVLVVPG TGTAQRATEQ
LREAQVGAVC VDSLDEPPRT GAVTVVRGAL EDGFALPELA LVVLTETDLT GGRGGTSTKD
MRRMPSRRRN AVDPLALRTG DYVVHEQHGI GRYVEMVQRT VAGATREYLV LEYASSKRGQ
PGDRLFVPTD QLDEVSRYVG GELPTLNKLG GSDWKNTKAK AKKAVKQIAA ELVQLYAARQ
SAPGHAFAPD TPWQRELEDA FPFTETVDQM AAIDEVKADM ERGVPMDRVI CGDVGYGKTE
IAVRAAFKAV QDGKQVVVLV PTTLLAQQHL NTFTERMRAF PVVVRGLSRF TDPTEAEQTT
TGLAEGDVDV VIGTHRLLQK GLRYKDLGLV IVDEEQRFGV EHKEHIKALR THVDVLTMSA
TPIPRTLEMS LAGIREMSTI LTPPEERHPI LTYVGGYADK QVGAAIRREL LRDGQVFYVH
NRVSSIEKAA RRIRELAPEA RVVTAHGQMN EDKLEKIIQG FWEREYDVLV STTIVETGLD
ISNANTLIVE RGDLLGLSQL HQLRGRVGRG RERGYAYFLY PPESPLSETA HDRLATIAQN
TELGAGMAVA MKDLEIRGAG NILGAEQSGH IAGVGFDLYV RLVGEAVEAF RRSAGADGEL
EVEPAEVRVE LPVDAHIPHD YVPGERLRLE AYRKIAAAVD EAGLTAVRDE LKDRYGAPPL
PVERLLDVAR LRHTCRAHGV TEVALQGSSI RFAPLELKDS QVVRLRRLHP KAVYKQAVST
ITTPRPTEGA AGGRMGAPPL RDQELLAWCA HFLESLAGAP VSGVTSS
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