Gene Amir_0520 details

Gene Information

• Locus tag: Amir_0520
• ID: 8324679
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 559621
• End bp: 561579
• Gene Length: 1959 bp
• Protein Length: 652 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 644941064
• Product: ABC transporter related
• Protein accession: YP_003098333
• Protein GI: 256374673
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00806721
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCGCCT CAACCGGCAA CGCGGAAGAC CCCACCGGGA CCAGGACCGG GACCGCCCAG 
GACCCGACCA CCCCCGCCCA GGACCCGACC ACCCCCGCCC AGGCCCCGAC CACCACCGCC 
CAGGACCCGA CCACCCCGCC CCCCACCGTC GACGGCTGGC GCGGCGTGGC CGCAGAGGAG 
GTCGACGCCC CCGACCACGC CACCGGCACC CGCCTGCGCG CCCGCTCCCG CCGCCTCCTC 
GGCTCCCTGC TCCGCCCCCA CGCCGGCCTG GTCGCCCTCT CCCTCGCCCT GATGGTCGTG 
GAGAACCTGG TCCTGCTCGC GGGCCCGCTC CTGATCGCCG CCGCGATCGA CCGGGGCGTC 
CCGGCCGCGC TCGACGGCGA CCCGACCACC CTCGCCTGGT GCGTCGGCGG CTACGCCGCG 
TCCGGCCTGG CCGCCACCGT CCTGCGCTAC GCGTTCGTGC GGCTCATCGG CCGCATCGGC 
CAGGACGTCC TGCTCGACCT GCGCCTGCGG GTGTTCCGGC ACGTCCAGCG GCTGTCCGTG 
TCCTTCCACG AGCGCTACAC CTCCGGCAAG GTCATCTCCC GGATGACCAA CGACGTCGAC 
TCGCTGCAGA ACCTGCTCGA CGAGGGCCTC GACGGGTTCT TCAACGCGAT GCTGTCGGTG 
TTCGCGATCA GCGTCGTGCT GTTCGCGCTG GACGTGCCCA TGGCGCTGTT CGTGCTGTCC 
GGGTTCCTGC CGCTGGTGCT GCTGGTCCGC TGGTTCCAGG CCCGCTCGGC GGCGGCCTAC 
CGGGGCACCA CCGGTTCGAT CGCCAAGGTC GTCGTGCAGC TGGTGGAGAC CATGAACGGC 
ATCCGCGCCG TGCAGGCGTT CCGCCGCGAG CCGCGCAACG AGCGCATCAT GGCCGACCTG 
AACGGCGCCT ACCGGGACGC CAACGTCACC GCGCTCACCG TGGTCGCCAC GTTCACCTCG 
GCCGTGCGCG CCATCGGCAA CATCTCGCTC GCCGTCCTGC TGGCGTGGGG CGCGTGGCGG 
GTCGCGGAGG GCACCCTGGA GCTGGGCGTG CTGGCCGCGT TCACCCTCTA CGTCCGGAGG 
TTCTACGACC CGATGGACAA CATCGCCATG TTCACCAACG CCTACGCCGC CGCGACCGCC 
GCGCTGGAGA AGCTGTCCGG GCTGCTGGAC GAGCGCCCGT CGGTGCCCGA CCCGGTCGAC 
CCGGTCCCGC TGGGGCCGGT GCGCGGCGAG GTCCGGTTCG AGGGCGTCGA GTTCCGCTAC 
CCGGCCTCCG ACTCGCTCGT GCTGCCCAGG TTCGACCTGC GCGTCCCGGC CGGGCAGACC 
GTGGCGCTGG TCGGCGCGAC CGGCGCGGGC AAGTCCACGC TGGCCAAGCT GGTCGCCCGC 
TTCTACGACC CGACCGGGGG AGCGGTGTGG CTGGACGGCG CCGACCTGCG GTCGGTGTCC 
GACGCGGACC TGCGCCGGGC CGTGGTGATG GTGACGCAGG AGAACTTCCT GTTCGAGGGC 
ACGGTCGCCG ACAACATCGC CCTCGGCCGC CCCGACGCCA CCCGCGAGGA GGTCGTCGCG 
GCGGCGGTCG CGGTCGGCGC GCACGACTTC ATCGGCGAGC TGCCCGACGG CTACGACACC 
GACGTGAGCA AGCGCGGCGG CCGGTTGTCC TCCGGGCAGC GGCAGCTGGT GGCGTTCGCG 
CGGGCGTTCC TGGCCGACCC GGCGGTGCTG GTGCTGGACG AGGCCACGTC GAGCCTGGAC 
GTGCCGACCG AGTGGACCGT GCAGTCCGCG CTGGAGACGG TCCTGGCCAG CCGGACGGCG 
TTCATCATCG CCCACCGGCT GTCCACGGTC CTGATCGCGG ACCGGGTGCT GGTGGTCGAC 
GGCGGCCGGG TCGTGGAGGA CGGGACGCCC GAGGAGCTGA TCGGGGAGCG GGGGCGGTTC 
GCGCGGTTGC ACGAGGCGTG GCGCGAATCG CTCGCCTGA 

 

Protein sequence

MSASTGNAED PTGTRTGTAQ DPTTPAQDPT TPAQAPTTTA QDPTTPPPTV DGWRGVAAEE 
VDAPDHATGT RLRARSRRLL GSLLRPHAGL VALSLALMVV ENLVLLAGPL LIAAAIDRGV 
PAALDGDPTT LAWCVGGYAA SGLAATVLRY AFVRLIGRIG QDVLLDLRLR VFRHVQRLSV 
SFHERYTSGK VISRMTNDVD SLQNLLDEGL DGFFNAMLSV FAISVVLFAL DVPMALFVLS 
GFLPLVLLVR WFQARSAAAY RGTTGSIAKV VVQLVETMNG IRAVQAFRRE PRNERIMADL 
NGAYRDANVT ALTVVATFTS AVRAIGNISL AVLLAWGAWR VAEGTLELGV LAAFTLYVRR 
FYDPMDNIAM FTNAYAAATA ALEKLSGLLD ERPSVPDPVD PVPLGPVRGE VRFEGVEFRY 
PASDSLVLPR FDLRVPAGQT VALVGATGAG KSTLAKLVAR FYDPTGGAVW LDGADLRSVS 
DADLRRAVVM VTQENFLFEG TVADNIALGR PDATREEVVA AAVAVGAHDF IGELPDGYDT 
DVSKRGGRLS SGQRQLVAFA RAFLADPAVL VLDEATSSLD VPTEWTVQSA LETVLASRTA 
FIIAHRLSTV LIADRVLVVD GGRVVEDGTP EELIGERGRF ARLHEAWRES LA