Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_3807 |
Symbol | |
ID | 4670912 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | - |
Start bp | 4041280 |
End bp | 4042974 |
Gene Length | 1695 bp |
Protein Length | 564 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639840840 |
Product | flagellar M-ring protein FliF |
Protein accession | YP_987990 |
Protein GI | 121596094 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.612856 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCTGCAG TTGCCGAAGT TCCCGTCGCT CCGCCTCCCG TCGCCAGCCC TGGCTGGCCG CAGCGGCTGG CCTCGCTCGA CCGTCCCGCA CGCCTGCGCC TGGGGGTGGT GGCAGCGCTG CTGGTCGCGG CGCTGCTGGC CGCATTCTTC TACAGCCGCC AGCCCGACTA CCGGGTGCTG TTCTCCGGCC TGAACGACAA GGACGGCGGC GCCATCGTGG CGCAGCTGTC GCAGATGAAT GTGCCTTACA AGTACACCGA AGGGGGCGGT GCCATCCTCG TGCCGGCCGA GCGCGTGCAC GACGTGCGCC TGCGCCTGGC CACGCAGGGC CTGCCCAAGG GATCGGTGAC CGGGTTCGAG CTGATGGAGA CCAACCGCTT CGGTGTCACC CAGTTCCAGG AGCGTCTGAA CTTCCAGCGC GGGCTGGAGG GGGAGCTGAC GCGCTCGATC CAGGCGCTGG CCTCGGTGCA AAGCGCACGC GTGCACCTGG CGCTGCCACA GCAAAACGGT TTCTTCCGCG AGCAGCAAAA GCCCTCGGCC TCGGTGTTGC TCAGCCTGTA CCCCGGGCGC TTCCTGGACC GCGCGCAGCT CGCAGGCATC GTGCACCTGG TGGCCTCCAG CGTGCCGGAA CTCGCTCCCT CAGCCGTGAG CGTGCTGGAC GATACCGGCA AGCTGCTGTC GCAGACGCCC GACATGGCCG GCGCCGGCGT GGACGCGCAG CAACTGGCCT ATGTGCAGCA GATCGAGCAG CAGTACGCAC GCCGCATCCT GGACCTGCTG GAGCCCGTCG TGGGCAAGAA CAACGTGAAG GCCCAGGTGA CCGCCGAAGT GGACTTCAAC CAGACCGAGT CCACCGTCGA GCAGCACAAG CCCAACCTGG CGCCCGATGC CAGCGCCGTG CGCAGCCAGC AGGTGGTGGA AAGCGGCGGC ACGCCCGGCG CGCAGCCACC GACCGGCGTG CCTGGTGCGG TGACCAACCA GCCGCCGCAG GCCTCCGCGG CTCCCATCAA CGGCGCCAAC CCCGCGCCCA CGGCGGCCGG CGGCGCGCCG GGCAGCGGCG CTGCGGGCCA GGCCAAGCGC GAATCCATCA CCAACTATGA GGTGGACAAG ACCACCCAGG TGACGCGCGG CGGCGCCGGC GCCATCAAGC GTGTGAACGC AGCCGTGGTG GTGAACTACC AGCCCGTGAG CGAAGGGCCG GGCAAGCCCG CGGTGAACAA GGCGCTGACG CCTGAACAGC TGGAGCAGAT GACGGCGCTG GTGCGCGAGA CGATCGGCTT CAACAAGGAG CGCGGCGATT CCGTCAACCT CATGAATGCC CCCTTCCTGG TGGAGGAGGT CCCCCCGGGC GAACTGCCGC TGTGGAAGCA GCCCGAGACG ATCGAGTTGG CCAAGACGCT GGGCTGGCCG CTGGGCATCT CTCTGGCCGC GGCCATCCTG CTGCTGGGGC TGCTGCGCCC GGCGCTCAAG GCCCGCGCCC GCGCCGTGCA GATGGCGGCG CAGCAGCCGG CGGGGGCGCA GCTGAGTGCC ATCGCCTCCG AAGAATTGCA GCGCCCCGGC TTGCCGGCGC CCGCGCAACC CGAAGAGCTG CAGCCCACGG CGGAACAACT GCGCCTGGAA GAGGCGCGCC AACTGGCCCG CGACAACCCC GTCGCCGTGG CCAGTATCCT CAAAACCTGG GTCAATGGCG ACTGA
|
Protein sequence | MSAVAEVPVA PPPVASPGWP QRLASLDRPA RLRLGVVAAL LVAALLAAFF YSRQPDYRVL FSGLNDKDGG AIVAQLSQMN VPYKYTEGGG AILVPAERVH DVRLRLATQG LPKGSVTGFE LMETNRFGVT QFQERLNFQR GLEGELTRSI QALASVQSAR VHLALPQQNG FFREQQKPSA SVLLSLYPGR FLDRAQLAGI VHLVASSVPE LAPSAVSVLD DTGKLLSQTP DMAGAGVDAQ QLAYVQQIEQ QYARRILDLL EPVVGKNNVK AQVTAEVDFN QTESTVEQHK PNLAPDASAV RSQQVVESGG TPGAQPPTGV PGAVTNQPPQ ASAAPINGAN PAPTAAGGAP GSGAAGQAKR ESITNYEVDK TTQVTRGGAG AIKRVNAAVV VNYQPVSEGP GKPAVNKALT PEQLEQMTAL VRETIGFNKE RGDSVNLMNA PFLVEEVPPG ELPLWKQPET IELAKTLGWP LGISLAAAIL LLGLLRPALK ARARAVQMAA QQPAGAQLSA IASEELQRPG LPAPAQPEEL QPTAEQLRLE EARQLARDNP VAVASILKTW VNGD
|
| |