Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_3107 |
Symbol | |
ID | 4672276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | + |
Start bp | 3280187 |
End bp | 3282019 |
Gene Length | 1833 bp |
Protein Length | 610 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639840148 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_987308 |
Protein GI | 121595412 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGATG CTCCGCGGCT GTCTCTGCGC GCACTGCTGC CTTCGCTGTC ACCCAGGGTG CGGCGGGGCG AAGGGCCGCT GGCGCGGCTG CTGCGCGCGG GTGGGCTGCA CTGCGTATTC CAGCCCCTGG CCGACCTGCG CGAGGGGAAC ATCTATTCAC ACGAGGCGCT GATCCGCGGC CCGGAAAACT CGCCGCTGCA GTCGCCCGAC GCCTTGCTGG CCCAGGCACG CGCCGAAGAC CTGCTGCACG ACTTCGAACT GCTGTGCGTC GCGCAGGCAC TCACCCAATG GGGCCAGCAG GCCACGCCGG GCCGGCTGTT CGTGAACATC AGCGCCGACG CGCTGGTCTG GGGCGTCGGG CTGTGCGGCG CGGAGCCTCT GGCCCACGTG GTGCGCCGGC TGGGCGTGTC CCCGCACATG GTGGTGCTGG AGATCACCGA GCACGAGCGC GTGCACGACC TGGTGCCGCT GCGCGACGCA CTGCGCCAGG TGCACGCCAG TGGCATGCGC CTGGCGCTGG ACGACTTCGG CGACGGCCAT TCCAGCCTGC GCCTGTGGTC GGAGGTGCGC CCCGACTTCG TGAAGATCGA CAAGTACTTC ACGCGCGACA TCGGCCAGCA CCCCGAGAAG CTGCAGATGC TGCAGGCGAT CCGCGGCATT GCCGAAGTGT TCGGCACCAC GCTGGTGGCC GAAGGCATCG AGACCAGCGA CGAGCTGCGC GCGCTGCGCG ACCTCGATAT TTCCTACGGC CAGGGCTACC TGCTGGGCCG GCCCGCGCGT ACCGCTCGCA TGGCGATCGA GCCGCCCGCG CTGGCCGTGC TGCGGGACCG CCGCGTGGCC GTGCTGCCGC ACGGCGGCCA GCCCATGCGC CCGGGCATCC TGCGCAACCT GCTCATGGCG CAGGCGCCCA CCGTCACGCC CTGCACCAGC AACGACGCGG TGGCCGAGCT GTTTCGCACG CATGGCGATC TGCACGCCAT TGCGGTGCTG GAGGGCGAAC GCCCCGTGGC GCTCATCAAC CGCCAAGAGT TCATGAACCA CTACGCCACG CTGTACTTTC GCGAGGTGCA CGGCCGCAAG CCCTGCATGG CGTTCGCCAG TACGTCGCCG CGCGTGGTGG AGATGGACTG CGACGTGGAG CATCTGGTGG GCATCCTCAC CTCGCAGGAC CAGCGCTACC TCAACGACGG TTTCATCGTC ACCGACAACG GGCGCTACGC GGGCCTGGGC ACCGGCGAGC AACTGGTGCG CGGCGTGACC GAAGCGCGCA TCGAGGCCGC GCGCCACGCC AACCCCCTCA CCTTCCTGCC CGGCAACATC CCCATCAGCC TGCACATGCA GCGCCTGCTG GACCACCGCG CGGCCTTCGT CGCCTGCTAC GCCGACCTGA ACCACTTCAA GCCCTTCAAC GACCACTACG GCTATTGGCG CGGCGACCAG ATGATCCGCC TGGTGGCGCG GCTGGCGCTG ACGCACTGCG ACCCGCGGGC CGACTTCGTG GGCCATGTGG GCGGTGACGA CTTCATGCTG CTGTTCCAGA GCAGCGACTG GCTGGCGCGC TGCCAGCGCA TCGTGGACTC GTTCGCGCGC GAGGCCATCG CCCTGTTCGA TGAATCTGCG CGCCAGGAAG GCGGCATCTG GGCCGAGGAC CGGCATGGCG TGAACCGTTT CTTTCGCTGC ACCACGCTGT CGATCGGCGC GGTGCGCGTG TCGCCGGGCA GCATGGAGCA TGCCGAAGAG GTGGCCAACC TCGCGGCGCT GGCCAAGCGC GATGCCAAGC AGTCGCACGC GGGCATCGCC TGGCGCGACG CCGGCCCAGG CGGGCTGGTC TGA
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Protein sequence | MPDAPRLSLR ALLPSLSPRV RRGEGPLARL LRAGGLHCVF QPLADLREGN IYSHEALIRG PENSPLQSPD ALLAQARAED LLHDFELLCV AQALTQWGQQ ATPGRLFVNI SADALVWGVG LCGAEPLAHV VRRLGVSPHM VVLEITEHER VHDLVPLRDA LRQVHASGMR LALDDFGDGH SSLRLWSEVR PDFVKIDKYF TRDIGQHPEK LQMLQAIRGI AEVFGTTLVA EGIETSDELR ALRDLDISYG QGYLLGRPAR TARMAIEPPA LAVLRDRRVA VLPHGGQPMR PGILRNLLMA QAPTVTPCTS NDAVAELFRT HGDLHAIAVL EGERPVALIN RQEFMNHYAT LYFREVHGRK PCMAFASTSP RVVEMDCDVE HLVGILTSQD QRYLNDGFIV TDNGRYAGLG TGEQLVRGVT EARIEAARHA NPLTFLPGNI PISLHMQRLL DHRAAFVACY ADLNHFKPFN DHYGYWRGDQ MIRLVARLAL THCDPRADFV GHVGGDDFML LFQSSDWLAR CQRIVDSFAR EAIALFDESA RQEGGIWAED RHGVNRFFRC TTLSIGAVRV SPGSMEHAEE VANLAALAKR DAKQSHAGIA WRDAGPGGLV
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