| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2536 |
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| Symbol | |
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| ID | 4672668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 2701523 |
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| End bp | 2703121 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639839601 |
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| Product | TrbL/VirB6 plasmid conjugal transfer protein |
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| Protein accession | YP_986770 |
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| Protein GI | 121594874 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.804219 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0000361128 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGTTC TGTCCAAAGC GGCGCTGATC GGCGTCGCCA TCGCGCTCTA CTCCACCGCC
GCATCGGCCC AGCTCACCAA CCAGGGGATG CTTGACCAGG TGGTGACGGA GTTCGCCACG
CGGGCCACGT CCTGGCAGAC GGTGGTAATG AATGCCGCGA TGTTCCTGTT CTGGACGCTG
GGCACGATCT CGCTGGTTTT TACCTTCGGC TTCATGGCGC TGCGCAAGGC CGACATTGGC
GAGTTCTTTG CCGAGTTCAT CAGGTTCATC CTGTTCTTCG GCTTCTTCCT CTGGCTGTTG
CGCAACGGCC CGGCCTTCGC TAACTCGATC ATCCAGTCAC TGGCCCGGAT CGGCGAGCAG
GCGTCCGGGG TGGCGTCGGT GACACCCTCG GGCATCGTGG ATATCGGCTT CATGATCTTG
AAGCAGGCAT TCATCAACTC GTCGATCTGG TCGCCCGTGG ATAGTTTCAT CGGTGTGGCA
TTGAGCCTCG GCATCCTGAT CCTGCTGGCT GTCGTCGCCA TAAACATGTT GCTGTTGCTC
GTGTCGGGCT GGCTGCTGAT GTACGCCGGT ATCTTCTTTC TCGGCTTCGG CGGCTCGCGT
TGGACATCCG ACATGGCGAT CAACTACTAC AAGACCGTGC TGGGCGTGGC CGTGCAGATC
ATGACGATGG TGCTCCTGGT CGGCATCGGG AACGACTTGC TTTCCAGCTT CTACGCCAGG
ATGAACACCG GCACCCTCAA CTTTGAAGAG CTGGGCGTGA TGCTGGTTTT CTGCGTGGCG
TTGCTCATGC TGGTCAATCG TGTGCCCCCG CTTGTCGCCG GCATCATCAC CGGCTCGGGC
ATCGGTGGCG CTGGCGGCAT TGGCAACTTC GGTGCAGGTG CCGCCATCGG TGCGGCTATG
GGCGCGGCGA GCATGGCCGC CGGAGCGGCC AGCGTGGCTG GCGCGGCCGT GATGGGCGGT
GCGACCTCGG CCGCCGGCGG CATGTCGGCG ATTAAGGCGG CGTTCGAGAA AGCAGGGGCT
AGCGCCGGTG GCGAATCGGG CGGAGTGCCC ATGTTTGGTG GTGGTGCTGG CGGTGATTCC
GATGTTGGAT CGTTCGCGCA GGCGGCGGGC TTTGGTGGCG GCGGTTCCAG TGCCGGCACA
AGTACGCCGC TCGGCCAGGC GGCCGGCTTT TACAGCTCTG GAAGCTCCAG CAGTTCGGGC
AGCAGCGGCG GCGAATCGAG GGGCGGCGAC AAAGCCGGCT CCAGCTCGAA GGGTAGCGGC
GATGGCGGCG GCTCGAAGGC CGGCGGCGGC AGCGACGCCG GCGGCCAAGC CGGCCGAGGT
GCGGGAAGCC TTGTCGCTGC GACGGCTGCG AACCTGGTGC AAGGCATTGG CGACGTTGCG
AAGGCCAAGG CGGCCAGCAT CCGCGACGCC GCCGCCGAAC GCATCGCCGA CACCACAGGC
GGGAAGATCG CCGCCGCGAT CCGGGCGAGC AGTCAGACAG ACCAGGCGGT GGAGGATGTG
CCCAGCTTCG GCGGCAACAG CCTGGCAGGG GCCGATTCGG CTGCTGCTGA TCCTGATGAT
GAAGTGGCCG CGTTCGCCAA CCGCGACAAG GAGGTATGA
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| Protein sequence | MKVLSKAALI GVAIALYSTA ASAQLTNQGM LDQVVTEFAT RATSWQTVVM NAAMFLFWTL
GTISLVFTFG FMALRKADIG EFFAEFIRFI LFFGFFLWLL RNGPAFANSI IQSLARIGEQ
ASGVASVTPS GIVDIGFMIL KQAFINSSIW SPVDSFIGVA LSLGILILLA VVAINMLLLL
VSGWLLMYAG IFFLGFGGSR WTSDMAINYY KTVLGVAVQI MTMVLLVGIG NDLLSSFYAR
MNTGTLNFEE LGVMLVFCVA LLMLVNRVPP LVAGIITGSG IGGAGGIGNF GAGAAIGAAM
GAASMAAGAA SVAGAAVMGG ATSAAGGMSA IKAAFEKAGA SAGGESGGVP MFGGGAGGDS
DVGSFAQAAG FGGGGSSAGT STPLGQAAGF YSSGSSSSSG SSGGESRGGD KAGSSSKGSG
DGGGSKAGGG SDAGGQAGRG AGSLVAATAA NLVQGIGDVA KAKAASIRDA AAERIADTTG
GKIAAAIRAS SQTDQAVEDV PSFGGNSLAG ADSAAADPDD EVAAFANRDK EV
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